Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IdOrtNobi

ABSTRACT: Orthonevra nobilis, genomic and transcriptomic data

PROVIDER: PRJEB63488 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR11606329_1.fastq.gz	Fastqsanger.gz
	ERR11606329_2.fastq.gz	Fastqsanger.gz
	ERR11641053.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

idOrtNobi

Project description:Orthonevra nobilis

| PRJEB63489 | ENA

Orthonevra nobilis

Project description:Orthonevra nobilis overview

| PRJNA1024623 | ENA

idOrtNobi1

Project description:Orthonevra nobilis genome assembly, idOrtNobi1

| PRJEB66631 | ENA

idOrtNobi1 alternate haplotype

Project description:Orthonevra nobilis genome assembly, idOrtNobi1, alternate haplotype

| PRJEB66630 | ENA

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

Laurel (Laurus nobilis L.) transcriptomic response to urban particulate matter

Project description:This study aimed to shed light on the gene regulatory networks underlying plant leaf responses to air particulate matter. Our investigation focused on autochthonous shrubs of laurel (Laurus nobilis L.) grown in pots located in two contrasting areas: a highly polluted traffic road and rural countryside within the same town (Altopascio, Lucca, Italy). RNA-seq data were related to leaf morphological traits and air particulate matter, allowing to identify key players in modulating the capabilities of plants to phyllo-remediate high air particulate matter levels in urban environment.

2023-03-16 | E-MTAB-12332 | biostudies-arrayexpress

idHydCyrt

Project description:Hydrotaea cyrtoneurina, genomic and transcriptomic data

| PRJEB56363 | ENA

idEusHist

Project description:Eustalomyia histrio, genomic and transcriptomic data

| PRJEB57279 | ENA

idTheSoli

Project description:Thelaira solivaga, genomic and transcriptomic data

| PRJEB57307 | ENA