Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

FEleCar

ABSTRACT: Electrona carlsbergi (electron subantarctic), genomic and transcriptomic data

PROVIDER: PRJEB63512 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR11606343_1.fastq.gz	Fastqsanger.gz
	ERR11606343_2.fastq.gz	Fastqsanger.gz
	ERR11606344_1.fastq.gz	Fastqsanger.gz
	ERR11606344_2.fastq.gz	Fastqsanger.gz
	ERR11641067.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

fEleCar

Project description:Electrona carlsbergi (electron subantarctic)

| PRJEB63513 | ENA

fEleAnt

Project description:Electrona antarctica (Antarctic lanternfish), genomic and transcriptomic data

| PRJEB60648 | ENA

fEleSub

Project description:Electrona subaspera (rough lanternfish), genomic and transcriptomic data

| PRJEB63622 | ENA

Electrona carlsbergi

Project description:Electrona carlsbergi overview

| PRJNA987777 | ENA

Electrona antarctica

Project description:Electrona antarctica overview

| PRJNA970460 | ENA

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

FCV-CNRS Aerobic-Anaerobic A. ferrooxidans

Project description:Transcriptomic study of A. ferrooxidans was explored either during aerobic growth with sulfur as an electron source and oxygen as final electron acceptor or in anaerobic conditions with ferric iron as the final electron receptor. Differential RNA levels were related to changes in cellular functions that were used to develop a preliminary model for A. ferrooxidans electron transport during dissimilatory ferric iron reduction.

2012-05-01 | E-MEXP-3361 | biostudies-arrayexpress

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

Project description:Microbial diversity of subantarctic waters

| PRJNA637656 | ENA

fEleAnt

Project description:Electrona antarctica (Antarctic lanternfish)

| PRJEB60649 | ENA