Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

FZeuFab

ABSTRACT: Zeus faber (John dory)

PROVIDER: PRJEB63619 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR11641143_1.fastq.gz	Fastqsanger.gz
	ERR11641143_2.fastq.gz	Fastqsanger.gz
	ERR11641144_1.fastq.gz	Fastqsanger.gz
	ERR11641144_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

fZeuFab8

Project description:Zeus faber (John dory) genome assembly, fZeuFab8

| PRJEB64533 | ENA

fZeuFab

Project description:Zeus faber (John dory), genomic and transcriptomic data

| PRJEB63618 | ENA

fZeuFab8 alternate haplotype

Project description:Zeus faber (John dory) genome assembly, fZeuFab8, alternate haplotype

| PRJEB64532 | ENA

Zeus faber

Project description:Zeus faber overview

| PRJNA990848 | ENA

Zeus RNAi expression profiling

Project description:Constitutive knockdown of Zeus gene and expression profiling of male wholebody and reproductive organs two-color, hybridize Zeus-RNAi and Caf40-RNAi against wildtype with male wholebody or reproductive organ samples

2012-04-30 | E-GEOD-36574 | biostudies-arrayexpress

Zeus Caf40 ChIP-chip

Project description:Zeus Caf40 ChIP-chip with FLAG tag in D. melanogaster adult flies

2012-05-01 | GSE36573 | GEO

Recent Cis-Trans Coevolution Driven by the Emergence of A Novel Gene in Drosophila

Project description:Young, or newly evolved, genes arise ubiquitously across the tree of life, and can rapidly acquire novel functions that influence a diverse array of biological processes (Chen et al. 2013)1. Previous work identified a young regulatory gene in Drosophila, Zeus, which diverged rapidly from its parent Caf40 and took on roles in the male reproductive system. This neofunctionalization was accompanied by differential binding of the Zeus protein to loci throughout the Drosophila melanogaster genome Chen et al. 2012)2. However, the way in which new DNA-binding proteins acquire and co-evolve with their targets in the genome is not understood. Here, by comparing Zeus ChIP-seq data from D. melanogaster and D. simulans to the ancestral Caf40 binding events from D. yakuba, a species that diverged before the duplication event, we find a dynamic pattern in which Zeus binding rapidly co-evolved with a previously unknown DNA motif under the influence of positive selection. Interestingly, while both copies of Zeus acquired targets at male-biased and testis-specific genes, D. melanogaster and D. simulans proteins have specialized binding on different chromosomes, a pattern echoed in the evolution of the associated motif. Our results suggest that evolution of young regulatory genes can be coupled to substantial re-wiring of the transcriptional networks into which they integrate, even over short evolutionary timescales. Our results thus uncover dynamic, genome-wide evolutionary processes associated with new genes.

2022-01-04 | GSE192880 | GEO

Psilopogon faber strain:NA

Project description:Psilopogon faber

| PRJNA965704 | ENA

Zeus RNAi expression profiling

Project description:Constitutive knockdown of Zeus gene and expression profiling of male wholebody and reproductive organs

2012-05-01 | GSE36574 | GEO

Project description:L. john

| PRJNA895756 | ENA