Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MPleAur

ABSTRACT: Plecotus auritus (brown big-eared bat)

PROVIDER: PRJEB65183 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR11872529_1.fastq.gz	Fastqsanger.gz
	ERR11872529_2.fastq.gz	Fastqsanger.gz
	ERR11872530_1.fastq.gz	Fastqsanger.gz
	ERR11872530_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 19

Similar Datasets

mPleAur1

Project description:Plecotus auritus (brown big-eared bat) genome assembly, mPleAur1

| PRJEB65991 | ENA

mPleAur

Project description:Plecotus auritus (brown big-eared bat), genomic and transcriptomic data

| PRJEB65182 | ENA

mPleAur1 alternate haplotype

Project description:Plecotus auritus (brown big-eared bat) genome assembly, mPleAur1, alternate haplotype

| PRJEB65990 | ENA

Plecotus auritus

Project description:Plecotus auritus overview

| PRJNA1007798 | ENA

Project description:Big brown bat phylogeography using RADseq

| PRJNA785863 | ENA

Grey long-eared bat 454 microsats

Project description:Grey long-eared bat Plecotus austriacus microsatellite loci sequenced using Illumina 454 sequencing

| PRJEB404 | ENA

Eptesicus fuscus

Project description:The big brown bat has an exceptionally long lifespan

| PRJNA72511 | ENA

Control of Embryonic Brown Adipocyte Development by GATA6 [ChIP-Seq]

Project description:Brown adipose tissue (BAT) is a thermogenic organ that protects animals against hypothermia and obesity. BAT derives from the multipotent paraxial mesoderm; however, the identity of embryonic brown fat progenitor cells and regulators of adipogenic commitment are unclear. We identified the transcription factor GATA6 as a selective marker of brown adipogenic progenitor cells. Deletion of Gata6 in the brown fat lineage resulted in a striking loss of BAT. To gain insight into the mechanism by which GATA6 supports BAT development, we performed ChIP-seq for GATA6 from the BAT of embryonic day 15.5 embryos.

2023-07-19 | GSE234012 | GEO

Epigenome in brown and white adipose tissue

Project description:PR (PRD1-BF1-RIZ1 homologous) domain-containing 16 (PRDM16) drives a brown fat differentiation program, but the mechanisms by which PRDM16 activates brown fat-selective genes have been unclear. Through chromatin immunoprecipitation (ChIP) followed by deep sequencing (ChIP-seq) analyses in brown adipose tissue (BAT), we reveal that PRDM16 binding is highly enriched at a broad set of brown fat-selective genes. Importantly, we found that PRDM16 physically binds to MED1, a component of the Mediator complex, and recruits it to superenhancers at brown fat-selective genes. PRDM16 deficiency in BAT reduces MED1 binding at PRDM16 target sites and causes a fundamental change in chromatin architecture at key brown fat-selective genes. Together, these data indicate that PRDM16 controls chromatin architecture and superenhancer activity in BAT.

2015-02-10 | GSE63964 | GEO

Next generation sequencing analysis of microRNAs in brown preadipocytes and in vitro differentiated mature brown fat cells

Project description:We performed a genome-wide deep sequencing analysis of the microRNAs abundant in mesenchymal stem cells (MSCs) derived from murine brown adipose tissue and in in vitro differentiated mature brown adipocytes. Several microRNAs were identified as differentially regulated when comparing datasets from MSCs vs. mature fat cells. These microRNAs may have an implication in the regulation of adipogenesis as well as thermogenesis in brown adipose tissue (BAT). Examination of BAT-derived MSCs (BAT-MSC; 1 sample) and in vitro differentiated mature brown fat cells (BAT-DIFF; 1 sample) vertis biotechnologie AG, D-85354 Freising, Germany (library construction and sequencing)

2013-05-28 | E-GEOD-45499 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data