Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

OdCinKuek

ABSTRACT: Cinachyrella kuekenthali (moon or golf ball sponge)

PROVIDER: PRJEB65614 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12411008_1.fastq.gz	Fastqsanger.gz
	ERR12411008_2.fastq.gz	Fastqsanger.gz
	ERR12411009_1.fastq.gz	Fastqsanger.gz
	ERR12411009_2.fastq.gz	Fastqsanger.gz
	ERR12408762.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

odCinKuek1.metagenome

Project description:Cinachyrella kuekenthali (moon or golf ball sponge) sponge metagenome assembly, odCinKuek1.metagenome

| PRJEB72579 | ENA

odCinKuek

Project description:Cinachyrella kuekenthali (moon or golf ball sponge), genomic and transcriptomic data

| PRJEB65613 | ENA

Cinachyrella kuekenthali

Project description:Cinachyrella kuekenthali overview

| PRJNA925953 | ENA

Transcriptomic changes in Cinachyrella cf cavernosa as a response to spatial competition

Project description:Demosponge Cinachyrella cf cavernosa is an inter-tidal sponge. It is found in competition with soft coral Zoanthus sansibaricus and macroalgae Dictyota ciliatum. The effect of these two spatial competitors on the gene expression profile of the sponge is checked. Sponges are collected from three distinct situations, 1. sponge without competitors, 2. sponge in competition with algae, and 3. sponge in competition with soft coral. Each group has three biological replicates.

2023-04-25 | E-MTAB-9052 | biostudies-arrayexpress

Cinachyrella kuekenthali metagenome

Project description:Cinachyrella kuekenthali metagenome Raw sequence reads

| PRJNA928854 | ENA

Cinachyrella kuekenthali metagenome

Project description:Cinachyrella kuekenthali metagenomic raw sequence reads

| PRJNA929091 | ENA

Cinachyrella kuekenthali metagenome

Project description:Cinachyrella kuekenthali metagenome Raw sequence reads

| PRJNA928209 | ENA

sponge metagenome

Project description:marine sponge Cinachyrella sp Metagenome

| PRJNA301178 | ENA

Project description:Metagenomes from the reef sponge, Cinachyrella alloclada

| PRJNA922977 | ENA

Kinome-wide RNAi screen uncovers role of Ballchen in maintenance of gene activation by trithorax group in Drosophila

Project description:We report an ex vivo kinome-wide RNAi screen in Drosophila aimed to identify cell signaling genes that facilitate trxG to counteract PcG mediated repression. From the list of trxG candidates, Ballchen (BALL), a histone kinase, known to phosphorylate histone H2A at threonine 119 (H2AT119p), was characterized as a trxG regulator. BALL co-localizes with Trithorax on chromatin and depletion of BALL results in increased H2AK118 ubiquitination, a histone mark central to PcG mediated gene silencing. Moreover, analysis of genome-wide binding profile of BALL shows an overlap with 85% known binding sites of TRX across the genome. Both BALL and TRX are highly enriched at actively transcribed genes, which also correlate with presence of H3K4me3 and H3K27ac. We propose that BALL mediated signal positively contributes to the maintenance of gene activation by trxG by counteracting the repressive effect of PcG.

2021-01-29 | GSE165685 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data