Project description:Longitudinal saliva bacteriome and early childhood caries
| PRJNA752888 | ENA
Project description:EMG produced TPA metagenomics assembly of PRJNA407905 data set (Human saliva Metagenomes).
| PRJEB43589 | ENA
Project description:EMG produced TPA metagenomics assembly of PRJNA470402 data set (human saliva metagenome Raw reads).
| PRJEB56856 | ENA
Project description:EMG produced TPA metagenomics assembly of PRJNA748214 data set (saliva samples Raw sequence reads).
| PRJEB47694 | ENA
Project description:EMG produced TPA metagenomics assembly of PRJNA791464 data set (Oral saliva microorganisms in 3-year-old children with different caries risk).
Project description:Childhood caries is an extremely common childhood chronic disease, affecting 60–90% of children in industrialized countries. It results in lesions in both the primary and permanent dentitions, hospitalizations and emergency room visits, high treatment costs, loss of school days, diminished ability to learn increases the risk of caries in adulthood. Streptococcus mutans is a key bacteria in caries development. While multiple caries risk factors have been identified, significant interpersonal variability not explained by known risk factors still exists. The immune system generates a personal antibody repertoire that helps maintain a balanced and healthy oral microbiome. Using mass-spectrometry, we probed in an hypothesis-free manner which S. mutans proteins are identified by antibodies of children with low and high DMFT (decayed, missing, filled teeth) scores. We identified a core set of proteins, recognized by the immune system of most individuals. This set was enriched with proteins enabling bacterial adhesion, and included glucosyltransferases and glucan-binding proteins known to be important for S. mutans cariogenicity. To explore the physiological relevance of these findings, we tested the ability of saliva from caries free individuals in preventing S. mutans from binding to the tooth surface. Indeed, saliva from individuals with caries free prevented S. mutans binding to teeth. These findings map the S. mutans proteome targeted by the immune system and suggest that inhibiting tooth attachment is a primary mechanism used by the immune system to maintain oral balance and prevent caries. These findings provide new insights into the role of the immune system in maintaining oral health and preventing caries development.
2023-06-26 | PXD043103 | Pride
Project description:EMG produced TPA metagenomics assembly of PRJNA380727 data set (human saliva metagenome Raw sequence reads).
| PRJEB56889 | ENA
Project description:EMG produced TPA metagenomics assembly of PRJNA479723 data set (Nanopore metagenomics).
| PRJEB42552 | ENA
Project description:EMG produced TPA metagenomics assembly of PRJEB30246 data set (Metagenomic_analysis_nasopharyngeal_colonisation).
| PRJEB75197 | ENA
Project description:EMG produced TPA metagenomics assembly of PRJNA639280 data set (v).