Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Land use transition effects on soil microbiomes

PROVIDER: PRJEB66294 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12074000_1.fastq.gz	Fastqsanger.gz
	ERR12074000_2.fastq.gz	Fastqsanger.gz
	ERR12074100_1.fastq.gz	Fastqsanger.gz
	ERR12074100_2.fastq.gz	Fastqsanger.gz
	ERR12074200_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 660

Similar Datasets

Project description:land conversion effects on soil microbiomes (Bacteria)

| PRJNA785090 | ENA

Project description:land conversion effects on soil microbiomes (Fungi)

| PRJNA785132 | ENA

Project description:land conversion effects on soil microbiomes (Protists)

| PRJNA785152 | ENA

Implications of the use of organic fertilizers for Antibiotic Resistant Gene dissemination in agricultural soils and fresh food products. A plot-scale study

Project description:The spread of antibiotic resistance genes (ARG) into agricultural soils, products, and foods severely limits the use of organic fertilizers in agriculture. In this study, experimental land plots were fertilized, sown, and harvested for two consecutive agricultural cycles using either mineral or three types of organic fertilizers: sewage sludge, pig slurry, or composted organic fraction of municipal solid waste. The analysis of the relative abundances of more than 200,000 ASV (Amplicon Sequence Variants) allowed the identification of a small, but significant (<10%) overlap between soil and fertilizer microbiomes, particularly in soils sampled the same day of the harvest (post-harvest soils). Loads of clinically relevant ARG were significantly higher (up to 100 fold) in fertilized soils relative to the initial soil. The highest increases corresponded to post-harvest soils treated with organic fertilizers, and they correlated with the extend of the contribution of fertilizers to the soil microbiome. Edible products (lettuce and radish) showed low, but measurable loads of ARG (sul1 for lettuces and radish, tetM for lettuces). These loads were minimal in mineral fertilized soils, and strongly dependent on the type of fertilizer. We concluded that at least part of the observed increase on ARG loads in soils and foodstuffs were actual contributions from the fertilizer microbiomes. Thus, we propose that adequate waste management and good pharmacological and veterinarian practices may significantly reduce the potential health risk posed by the presence of ARG in agricultural soils and plant products.

2021-07-09 | GSE179685 | GEO

Project description:Land use effects on carbon use efficiency

| PRJNA1088078 | ENA

soil 16S and ITS amplicon data

Project description:Land use impacts on mesquite-associated microbiomes

| PRJNA839634 | ENA

Environmental water

Project description:Land-use effects on water quality

| PRJNA798233 | ENA

Soil metaproteome and pH effects

Project description:Soil microorganisms act as gatekeepers for soil-atmosphere carbon exchange by balancing the accumulation and release of soil organic matter. However, poor understanding of the mechanisms responsible hinders the development of effective land management strategies to enhance soil carbon storage. Here we empirically test the link between microbial ecophysiological traits and topsoil carbon content across geographically distributed soils and land use contrasts. We discovered distinct pH-controls on microbial mechanisms of carbon accumulation. Land use intensification in low-pH soils that increased pH above a threshold (~ 6.2) lead to carbon loss through increased decomposition following alleviation of acid-retardation of microbial growth. However, loss of carbon with intensification in near neutral-pH soils was linked to decreased microbial biomass and reduced growth efficiency that was, in turn, related to tradeoffs with stress alleviation and resource acquisition. Thus, less intensive management practices in near neutral-pH soils have more potential for carbon storage through increased microbial growth efficiency; whereas, in acidic soils microbial growth is a bigger constraint on decomposition rates.

2018-07-26 | PXD010526 | Pride

Project description:Different land-use soil bacterial community

| PRJNA917433 | ENA

Project description:land conversion effect on soil microbiomes

| PRJNA785024 | ENA