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OdDysAvar

ABSTRACT: Dysidea avara, genomic and transcriptomic data

PROVIDER: PRJEB68235 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	ERR12257381.fastq.gz	Fastqsanger.gz
	ERR12259796_1.fastq.gz	Fastqsanger.gz
	ERR12259796_2.fastq.gz	Fastqsanger.gz
	ERR12259797_1.fastq.gz	Fastqsanger.gz
	ERR12259797_2.fastq.gz	Fastqsanger.gz

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1 - 5 of 11

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odDysAvar

Project description:Dysidea avara

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odDysAvar1

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Transcriptomic profiles of two sponge species upon exposure to microbial-associated molecular patterns (lipopolysaccharide and peptidoglycan) compared against control (sterile artificial seawater)

Project description:The interaction of animals with microbes relies on the specific recognition of microbial-derived molecules by receptors of the immune system. Sponges (phylum Porifera), as sister group of the Eumetazoa, provide insights into conserved mechanisms for animal-microbe crosstalk, but empirical data is limited. Here we aimed to characterize the immune response of sponges upon microbial stimuli by RNA-Seq. Two sponges species from the Mediterranean Sea, Aplysina aerophoba and Dysidea avara, were challenged with microbial-associated molecular patterns (lipopolysaccharide and peptidoglycan) or sterile artificial seawater (control) in aquarium experiments. Sponge tissue samples were collected 1h, 3h, and 5h after treatment. The response of the sponges to the treatments was assessed by differential gene expression analysis of RNA-Seq data. For each species, we compared the transcriptomic profiles of the samples in MAMP treatment to control within each time point.

2018-11-26 | E-MTAB-6757 | biostudies-arrayexpress

Project description:Sponge microbiome Aplysina aerophoba and Dysidea avara

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odDysAvar1 alternate haplotype

Project description:Dysidea avara genome assembly, odDysAvar1, alternate haplotype

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odDysAvar1.metagenome

Project description:Dysidea avara sponge metagenome assembly, odDysAvar1.metagenome

| PRJEB72582 | ENA

Dysidea avara combined omics

Project description:Dysidea avara bacterial metagenomes and whole-tissue metatranscriptomes

| PRJEB24806 | ENA

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

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Exploration of NOD-Like Receptors in the chromosome-level genome of the demosponge Dysidea avara (Schmidt, 1862)

Project description:Generation of chromosome level genome assembly of the marine sponge Dysidea avara and exploration of immune receptor NOD-Like structures and expansion

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