Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DdLepDidy

ABSTRACT: Lepidium didymum, genomic and transcriptomic data

PROVIDER: PRJEB68269 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12259823_1.fastq.gz	Fastqsanger.gz
	ERR12259823_2.fastq.gz	Fastqsanger.gz
	ERR12259824_1.fastq.gz	Fastqsanger.gz
	ERR12259824_2.fastq.gz	Fastqsanger.gz
	ERR12259825_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

ddLepDidy

Project description:Lepidium didymum

| PRJEB68270 | ENA

Lepidium didymum

Project description:Lepidium didymum overview

| PRJNA1056114 | ENA

ddLepDidy1

Project description:Lepidium didymum genome assembly, ddLepDidy1

| PRJEB71486 | ENA

ddLepDidy1 alternate haplotype

Project description:Lepidium didymum genome assembly, ddLepDidy1, alternate haplotype

| PRJEB71487 | ENA

Comparative genomic hybridization of DNA from Lepidium sativum and Arabidopsis thaliana

Project description:An experiment was performed to compare genomic DNA from Lepidium sativum and Arabidopsis thaliana, on microarrays spotted with CATMA Arabidopsis GSTs

2010-10-02 | E-TABM-744 | biostudies-arrayexpress

Lepidium sativum seed germination timecourse

Project description:This series analyses germinating Lepidium sativum seeds with both temporal and spatial detail. This is a cross species microarray normalisation on Arabidopsis thaliana chips. Performed as part of the vSEED project

2015-02-20 | GSE55702 | GEO

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

Project description:Comparative transcriptomics of Lepidium appelianum and Lepidium campestre

| PRJNA769250 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

Lepidium sativum

Project description:Lepidium sativum overview

| PRJNA276020 | ENA