Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The immunotrascriptome of the reef-building coral Pseudodiploria strigosa

ABSTRACT: To characterize the immunotrascriptome of the reef-building coral from the Caribbean, Pseudodiploria strigosa, after immune-challenge. This study contributes to understand the complexity that define the health and disease balance in corals, as well as the alarming morbidity and mortality of corals in the Caribbean.

PROVIDER: PRJEB6871 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR571317.fastq.gz	Fastqsanger.gz
	ERR571317_1.fastq.gz	Fastqsanger.gz
	ERR571317_2.fastq.gz	Fastqsanger.gz
	ERR571318.fastq.gz	Fastqsanger.gz
	ERR571318_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Pseudodiploria strigosa

Project description:The immunotrascriptome of the reef-building coral Diploria strigosa

| PRJDB2983 | ENA

Pseudodiploria strigosa

Project description:The immunotranscriptome of the reef-building coral Diploria strigosa

| PRJNA242209 | ENA

Pseudodiploria strigosa

Project description:Diploria strigosa overview

| PRJNA255821 | ENA

Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals

Project description:Reef-building corals play an important role in the marine ecosystem, and analyzing their proteomes from a structural perspective will exert positive effects on exploring their biology. Here we integrated mass spectrometry with newly published AI systems to obtain digital structural proteomes of dominant reef-building corals.

2022-06-30 | PXD034973 |

Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef-building corals

Project description:Acclimatization through phenotypic plasticity represents a more rapid response to environmental change than adaptation and is vital to optimize organisms’ performance in different conditions. Generally, animals are less phenotypically plastic than plants, but reef-building corals exhibit plant-like properties. They are light-dependent with a sessile and moddular construction that facilitates rapid morphological changes within their lifetime. We induced phenotypic changes by altering light exposure in a reciprocal transplant experiment and found that coral plasticity is a colony trait emerging from comprehensive morphological and physiological changes within the colony. Plasticity in skeletal features optimized coral light harvesting and utilization and paralleled with significant methylome and transcriptome modifications. Network-associated responses resulted in the identification of hub genes and clusters associated to the change in phenotype: inter-partner recognition and phagocytosis, soft tissue growth and biomineralization. Furthermore, we identified hub genes putatively involved in animal photoreception-phototransduction. These findings fundamentally advance our understanding of how reef-building corals repattern the methylome and adjust a phenotype, revealing an important role of light sensing by the coral animal to optimize photosynthetic performance of the symbionts. This SuperSeries is composed of the SubSeries listed below.

2024-01-01 | GSE245494 | GEO

Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef-building corals [Methyl-seq]

2024-01-01 | GSE245492 | GEO

Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef-building corals [RNA-seq]

2024-01-01 | GSE245487 | GEO

High natural gene expression variation in the reef-building coral Acropora millepora: Potential for acclimative and adaptive plasticity

Project description:This experiment assessed the natural gene expression variation present between colonies of the Indo-Pacific reef-building coral Acropora millepora, and additionally explored whether gene expression differed between two different intron haplotypes according to intron 4-500 in a carbonic anhydrase homolog. This study found no correspondence between host genotype and transcriptional state, but found significant intercolony variation, detecting 488 representing unique genes or 17% of the total genes analyzed. Such transcriptomic variation could be the basis upon which natural selection can act. Underlying variation could potentially allow reef corals to respond to different environments. Whether this source of variation and the genetic responses of corals and its symbionts will allow coral reefs to cope to the rapid pace of global change remains unknown.

2013-04-08 | GSE42684 | GEO

Surviving climate change – the role of acclimatization in reef-building corals [MethylRAD]

Project description:Branching coral species like the Caribbean Acroporids are long lived and reproduce asexually via breakage of branches. Fragmentation is the dominant mode of local population maintenance for these corals across much of their range. Thus, large genets with many member ramets (colonies) are common. Each of the ramets experiences different microenvironments, especially with respect to light and water flow. Here, we investigate whether colonies that are members of the same genet have different epigenomes because of differences in their microenvironments. The Florida Keys experienced a large- scale coral bleaching event in 2014-2015 caused by high water temperatures. During the event, ramets of the same coral genet bleached differently. Previous work had shown that this was unlikely to be due to their eukaryotic algal symbionts (Symbiodinium ‘fitti’) because each genet of this coral species typically harbors a single strain of S. ‘fitti’. Characterization of the microbiome via 16S tag sequencing did not provide evidence for a central role of microbiome variation in determining bleaching response. Instead, epigenetic changes were significantly correlated with the host’s genetic background, the position of the sampled polyps within the colonies (e.g. tip versus base of colony), and differences in the colonies’ condition during the bleaching event. We conclude that microenvironmental differences in growing conditions led to long-term changes in the way the ramets methylated their genomes and thus to a differential bleaching response.

2019-12-05 | GSE124246 | GEO