Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis halleri, genomic and transcriptomic data.

ABSTRACT: Arabidopsis halleri, genomic and transcriptomic data.

PROVIDER: PRJEB70477 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12318639_1.fastq.gz	Fastqsanger.gz
	ERR12318639_2.fastq.gz	Fastqsanger.gz
	ERR12318640.fastq.gz	Fastqsanger.gz
	ERR12318641.fastq.gz	Fastqsanger.gz
	ERR12318642_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Genomic data from pooled root and shoot tissue of Arabidopsis thaliana, Arabidopsis halleri and Arabidopsis lyrata

Project description:Gene copy number variation (CNV) is a form of genetic polymorphism that contributes significantly to genome size and function but remains poorly characterized due to technological limitations. Inter-specific comparisons of CNVs in recently diverged plant species are crucial to uncover selection patterns underlying adaptation of a species to stressful environments. Especially given that gene amplifications have long been implicated in emergence of species-specific traits, we conducted a genome-wide survey to identify species-specific gene copy number expansions and deletions in the model extremophile species - Arabidopsis halleri that has diverged in evolutionarily recent time from Arabidopsis thaliana. Cross-species cDNA array based comparative genomic hybridization was employed to compare and identify gene copy number variation in the two sister-species - the metallophyte Arabidopsis halleri and non-metallophyte Arabidopsis lyrata, both relative to Arabidopsis thaliana. We uncovered an unprecedented level of gene copy number polymorphism in Arabidopsis halleri, with a species-specific enrichment of metal homeostasis function in the genes found to be copy number expanded, thus indicating CNV as a mechanism that underlies the key physiological trait of metal hyperaccumulation and hypetolerance in A. halleri.

2016-09-30 | GSE52003 | GEO

Arabidopsis halleri subsp. halleri

Project description:Arabidopsis halleri subsp. halleri Genome sequencing and assembly

| PRJNA422908 | ENA

Arabidopsis halleri

Project description:Arabidopsis halleri Genome sequencing

| PRJNA883160 | ENA

Arabidopsis halleri

Project description:Arabidopsis halleri Genome sequencing

| PRJNA323150 | ENA

Genomic data from pooled root and shoot tissue of Arabidopsis thaliana, Arabidopsis halleri and Arabidopsis lyrata

Project description:Genomic data from pooled root and shoot tissue of Arabidopsis thaliana, Arabidopsis halleri and Arabidopsis lyrata

| PRJNA226090 | ENA

Arabidopsis halleri

Project description:Arabidopsis halleri Genome sequencing and assembly

| PRJNA492199 | ENA

Arabidopsis halleri

Project description:AhNAS2 suppression in Arabidopsis halleri roots

| PRJNA145285 | ENA

AhNAS2 suppression in Arabidopsis halleri roots

Project description:The model Zn hyperaccumulators Arabidopsis halleri and Noccaea caerulescens share elevated nicotianamine synthase (NAS) expression relative to non-accumulators among a core of alterations in metal homeostasis gene expression. Suppression of AhNAS2 expression by RNAi resulted in strongly reduced root NA accumulation and a concomitant decrease in root-to-shoot-translocation of Zn but not of other micronutrients. Few secondary effects on the root transcriptome were detected by microarray analysis.

2011-12-31 | GSE31778 | GEO

Arabidopsis halleri

Project description:Arabidopsis halleri Raw sequence reads of populations

| PRJNA495924 | ENA

Arabidopsis halleri subsp. halleri strain:Wild plants

Project description:Arabidopsis halleri subsp. halleri strain:Wild plants Genome sequencing

| PRJNA217703 | ENA