Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DhMyrGale

ABSTRACT: Myrica gale (bog myrtle)

PROVIDER: PRJEB70986 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR12370313.fastq.gz	Fastqsanger.gz
	ERR12370314.fastq.gz	Fastqsanger.gz
	ERR12356320_1.fastq.gz	Fastqsanger.gz
	ERR12356320_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

dhMyrGale1

Project description:Myrica gale (bog myrtle) genome assembly, dhMyrGale1

| PRJEB72166 | ENA

dhMyrGale

Project description:Myrica gale (bog myrtle), genomic and transcriptomic data

| PRJEB70985 | ENA

dhMyrGale1 alternate haplotype

Project description:Myrica gale (bog myrtle) genome assembly, dhMyrGale1, alternate haplotype

| PRJEB72165 | ENA

Myrica gale

Project description:Myrica gale overview

| PRJNA1070785 | ENA

Comparison of transcriptome between free-living and symbiotic cells of Frankia alni ACN14a

Project description:The actinobacteria Frankia alni is able to induce the formation of nodules on the root of a large spectrum of actinorhizal plants, where it converts dinitrogen to ammonia in exchange for plant photosynthates. In the present study, transcriptional analyses were performed on nitrogen-replete free-living cells and on Alnus glutinosa nodule bacteria, using whole genome microarrays. Distribution of nodule-induced genes on the genome was found to be mostly over regions with high synteny between three Frankia genomes, while nodule-repressed genes, which were mostly hypothetical and not conserved, were spread around the genome. Genes known to be related to symbiosis were highly induced: nif (nitrogenase), hup2 (hydrogenase uptake), suf (sulfur-iron cluster) and shc (hopanoids synthesis). The expression of genes involved in ammonium assimilation and transport was strongly modified suggesting that bacteria ammonium assimilation was limited. Genes involved in particular in transcriptional regulation, signalling processes, protein drug export, protein secretion, lipopolysaccharide and peptidoglycan biosynthesis that may play a role in symbiosis were also identified. We showed that this nodule transcriptome of Frankia was highly similar among phylogenetically distant plant families. To address gene expression changes of Frankia alni ACN in the symbiotic state, we compared transcript levels between young nodules formed on 4 species of trees (Alnus glutinosa, Alnus nepalensis, Myrica gale and Myrica rubra) and free-living cells grown in nitrogen-replete minimal medium. For A. glutinosa nodule and free-living cells, two sets of experiments (A and B) were performed in two different laboratories. Three biological replicates were preformed for each condition.

2010-09-12 | E-GEOD-18190 | biostudies-arrayexpress

Morella pensylvanica

Project description:Myrica pensylvanica transcriptome - totalRNA_10

| PRJNA441454 | ENA

Morella pensylvanica

Project description:Myrica pensylvanica transcriptome - totalRNA_4

| PRJNA441451 | ENA

Morella pensylvanica

Project description:Myrica pensylvanica transcriptome - totalRNA_8

| PRJNA441452 | ENA

Morella pensylvanica

Project description:Myrica pensylvanica transcriptome - totalRNA_9

| PRJNA441453 | ENA

RNAseq study (root and shoot) of Holcus lanatus ecotypes selected from two widely contrasting habitats, acid bog (pH 3.5) or limestone quarry spoil (pH 7.5)

Project description:The aim of this study was to investigate ecotypic adaptation in Holcus lanatus in plants selected from two widely contrasting habitats, acid bog (pH 3.5) or limestone quarry spoil (pH 7.5), using a transcriptome based analysis approach including sequence analysis of root associated Glomeromycota. Differential gene expression in root and shoot of naturally occurring H. lanatus ecotypes, selected from either habitat and grown in a full factorial reciprocal soil transplant experiment were investigated and ecotype specific SNPs identified.

2018-03-15 | E-MTAB-4014 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data