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Genome sequence of Parasitella parasitica

ABSTRACT: Genome sequence of the mucoralean fusion parasite Parasitella parasitica

PROVIDER: PRJEB7124 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	ERR590338.fastq.gz	Fastqsanger.gz
	ERR590344_1.fastq.gz	Fastqsanger.gz
	ERR590344_2.fastq.gz	Fastqsanger.gz
	ERR590369_1.fastq.gz	Fastqsanger.gz

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Project description:The complete mitochondrial DNA sequence of the Mucor-related fungus Parasitella parasitica has been sequenced. It has a G+C content of 30% and a total length of 83,361 bp. All protein-coding genes normally found in fungi are present in the sequence. A special feature is the remarkably high number of 27 homing endonucleases.

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RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls

Project description:We performed RNA-Seq mediated transcriptomic analysis of arabidopsis Col-0 and gsnor1-3 seedlings post infection by Phytophthora parasitica/mock to determine the impact of loss of GSNOR1 function on global gene expression following P. parasitica inoculation.

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Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome

Project description:Oomycetes from the genus Phytophthora are fungus-like plant pathogens that are devastating for agriculture and natural ecosystems. Due to particular physiological characteristics, no treatments against diseases caused by oomycetes are presently available. To develop such treatments, it appears essential to dissect the molecular mechanisms that determine the interaction between Phytophthora species and host plants. The present project is focused on the molecular mechanisms that underlie the compatible plant-oomycete interaction and plant disease. The laboratory developed a novel interaction system involving the model plant, Arabidopsis thaliana, and Phytophthora parasitica, a soil-borne pathogen infecting a wide host range, thus representing the majority of Phytophthora species. A characteristic feature of the compatible Arabidopsis/P. parasitica interaction is an extended biotrophic phase, before infection becomes necrotrophic. Because the initial biotrophic phase is extremely short on natural (e.g. solanaceous) hosts, the Arabidopsis system provides the opportunity to analyze, for both interaction partners, the molecular events that determine the initiation of infection and the switch to necrotrophy. The present project aims at analyzing the compatible interaction between A. thaliana roots and P. parasitica. The Affymetrix A. thaliana full genome chip will be used to characterize modulations of the transcriptome occurring over a period of 24h from the onset of plant root infection to the beginning of necrotrophy. Parallel to this study, a custom-designed P. parasitica biochip will enable analyzing of P. parasitica gene expression during the same stages.

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