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GfLacFrat

ABSTRACT: Laccaria fraterna (gumtree deceiver), genomic and transcriptomic data

PROVIDER: PRJEB72484 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	ERR12666654.fastq.gz	Fastqsanger.gz
	ERR12668766_1.fastq.gz	Fastqsanger.gz
	ERR12668766_2.fastq.gz	Fastqsanger.gz
	ERR12668767_1.fastq.gz	Fastqsanger.gz
	ERR12668767_2.fastq.gz	Fastqsanger.gz

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Laccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development

Project description:This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with P. trichocarpa. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238N We performed 16 hybridizations (NimbleGen) with samples derived from P.trichocarpa/L.bicolor mycorrhizal root tips. Samples were taken after 2,4,6 and 12 weeks of interaction (four biological replicates). These samples were compared to free-living mycelium from Laccaria bicolor S238N (three biological replicates). All samples were labeled with Cy3.

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Project description:This study characterizes the transcriptomic alterations of P. trichocarpa during interaction with the ectomycorrhizal fungus Laccaria bicolor S238N. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation.

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Project description:Transcript profiles of Laccaria bicolor S238N mycelium on various media were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Laccaria bicolor genome sequence version 1. One goal was to evaluate the effect of nutrient deprivation on the transcriptome of Laccaria bicolor.

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