Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DrPruPadu

ABSTRACT: Prunus padus (bird cherry), genomic and transcriptomic data

PROVIDER: PRJEB73668 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12737286_1.fastq.gz	Fastqsanger.gz
	ERR12737286_2.fastq.gz	Fastqsanger.gz
	ERR12736894.fastq.gz	Fastqsanger.gz
	ERR12736895.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

drPruPadu

Project description:Prunus padus (bird cherry)

| PRJEB73669 | ENA

drPruPadu1

Project description:Prunus padus (bird cherry) genome assembly, drPruPadu1

| PRJEB75998 | ENA

drPruPadu1 alternate haplotype

Project description:Prunus padus (bird cherry) genome assembly, drPruPadu1, alternate haplotype

| PRJEB75997 | ENA

drPruAviu

Project description:Prunus avium (sweet cherry), genomic and transcriptomic data

| PRJEB73957 | ENA

ilYpoEvon

Project description:Yponomeuta evonymella (bird-cherry ermine), genomic and transcriptomic data

| PRJEB67424 | ENA

Prunus padus

Project description:Prunus padus overview

| PRJNA838666 | ENA

Proteomic changes in sweet cherry fruit (cv. ‘Tsolakeika’) in response to calcium application.

Project description:The experiment was performed in a commercial sweet cherry (cv. Tsolakeika, Prunus avium L.) orchard in North Greece (Edessa) during 2017 growing season. The orchard contained 10-years old trees, planted at 5x5 m spacing between rows and along the row, grafted onto Mahaleb cherry (Prunus mahaleb L.) rootstock, trained in open vase and subjected to standard cultural practices. Three foliar sprays (0.5% or 35 mM CaCl2) were performed at 15, 27 and 37 days after full blossom (DAFB). Cherry fruits (exocarp plus mesocarp tissues) were sampled in two developmental stages, namely at full red color (44 DAFB, S4 stage) and at commercial harvest (55 DAFB, S5 stage). Three biological replicates of 20-fruit sub-lots in control and Ca-treated fruits were frozen in liquid nitrogen, grinding in fine powder and stored at -80 ⁰C for proteomic processing.

2021-11-01 | PXD018227 | Pride

Transcriptome profiling of Pseudomonas syringae pv. syringae 9644 in rich media and hrp-inducing minimum media

Project description:Pseudomonas syringae pv. syringae 9644 (Pss9644) is a causal agent of bacterial cherry canker causing necrotic symptoms on leaves, fruits, gummosis and canker in woody tissues of sweet cherry (Prunus avium). To understand which virulent factor genes were expressed in vitro, Pss9644 was grown in rich media (King's B Broth) and minimum media (hrp-inducing minimum media). The latter mimics the in planta environment.

2024-04-07 | GSE255102 | GEO

Diurnal rhythms in durum wheat triggered by Rhopalosuphum padi (bird cherry-oat aphid)

Project description:Metabolomics datasets for: Diurnal rhythms in durum wheat triggered by Rhopalosuphum padi (bird cherry-oat aphid)

2024-07-31 | MSV000095493 | MassIVE

Trancriptomic analysis of flower bud dormancy in sweet cherry

Project description:Bud dormancy is a crucial stage in perennial trees and allows survival over winter and optimal subsequent flowering and fruit production. Environmental conditions, and in particular temperature, have been shown to influence bud dormancy. Recent work highlighted some physiological and molecular events happening during bud dormancy in trees. However, we still lack a global understanding of transcriptional changes happening during bud dormancy. We conducted a fine tune temporal transcriptomic analysis of sweet cherry (Prunus avium L.) flower buds from bud organogenesis until the end of bud dormancy using next-generation sequencing. We observe that buds in organogenesis, paradormancy, endodormancy and ecodormancy are characterised by distinct transcriptional states, and associated with different pathways. We further identified that endodormancy can be separated in two phases based on its transcriptomic state: early and late endodormancy. We also found that transcriptional profiles of just 7 genes are enough to predict the main cherry tree flower buds dormancy stages. Our results indicate that transcriptional changes happening during dormancy are robust and conserved between different sweet cherry cultivars. Our work also sets the stage for the development of a fast and cost effective diagnostic tool to molecularly define the flower bud stage in cherry trees.

2019-12-16 | GSE130426 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data