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Genomes of marine heterotrophic flagellates (Catalan Initiative for the Earth Biogenome Project )

ABSTRACT: Genome assemblies of marine heterotrophic flagellates from the Catalan Initiative for the Earth Biogenome Project

PROVIDER: PRJEB74069 | ENA |

REPOSITORIES: ENA

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Genomic data of marine heterotrophic flagellates (Catalan Initiative for the Earth Biogenome Project )

Project description:Genomic data of marine heterotrophic flagellates from the Catalan Initiative for the Earth Biogenome Project

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Project description:Catalan Initiative for the Earth Biogenome Project (CBP)

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Project description:Catalan Initiative for the Earth BioGenome Project (CBP)

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Project description:i5k initiative

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Transcriptomic response of Arabidopsis thaliana to the two rare earth elements lanthanum and ytterbium

Project description:The goal of this study is to compare the transcriptome (RNA-seq) modulations in the roots and shoots of Arabidopsis thaliana, as a plant model, exposed to two toxic concentrations of rare earth elements. Lanthanum and ytterbium were used as representative of light and heavy rare earth elements, respectively.

2023-07-23 | GSE237657 | GEO

Photoperiodic spectral tuning of carbon metabolism in heterotrophic marine flavobacteria

Project description:Influence of the constant full-spectrum light and short-to-long wavelengths of the visible spectrum (red, green and blue lights) and the significance of 12 h photoperiod was tested on heterotrophic marine flavobacteria Siansivirga zeaxanthinifaciens CC-SAMT-1T. RNA-seq analysis revealed remarkable qualitative and quantitative variations in terms of gene expression in CC-SAMT-1T with respect to incident lights. While blue light illumination stimulated expression of genes involved in inorganic carbon metabolism, green˗red lights largely upregulated the genes participating in high-molecular-weight (HMW) organic carbon metabolism. Constant full-spectrum light also displayed the upregulation of genes involved in the metabolism of HMW organic carbon. Thus, the short-to-long wavelengths of visible light and the 12 h photoperiod most likely to play a key role in the marine carbon cycle by tuning heterotrophic bacterial metabolism.

2020-04-15 | GSE129810 | GEO

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