Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparative analysis of Cucurbita pepo genomes shed light in agronomic traits variation

PROVIDER: PRJEB74211 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	Eightgenomes.vcf.csi	Other
	Eightgenomes.vcf.gz	Vcf

Items per page:

1 - 2 of 2

Similar Datasets

Gene expression in squash (Cucurbita pepo) nectaries

Project description:Nectaries are the glands responsible for nectar secretion. To understand the genetic programming underlying nectar production, male and female squash(Cucurbita pepo) floral nectaries at four different time points (pre-secretion #1, pre-secretion #2, secretory, and post-secretory) in biological triplicate were collected, with RNA being isolated and subjected to Illumina RNA-seq analysis.

2018-03-13 | GSE111695 | GEO

Cucurbita pepo cultivar:Zucchini x Scallop

Project description:Cucurbita pepo cultivar:Zucchini x Scallop Variation

| PRJNA344022 | ENA

Comparative genome hybridization of Enteropathogenic Yersinia

Project description:Enteropathogenic Yersinia enterocolitica and Yersinia pseudotuberculosis share many traits in terms of infections they cause, but their epidemiology and ecology seem to differ in many ways. Pigs are the only known reservoir for Y. enterocolitica 4/O:3 strains while Y. pseudotuberculosis strains have been isolated from variety of sources including fresh vegetables and wild animals. A comparative genomic hybridization (CGH) analysis with a DNA microarray based on three Yersinia enterocolitica and four Yersinia pseudotuberculosis genomes was conducted to shed light on genomic differences between the enteropathogenic Yersinia. In total 99 strains isolated from various sources were hybridized and analyzed.

2015-10-01 | GSE67565 | GEO

Project description:Proteome of Cucurbita pepo subsp. pepo

| PRJNA396465 | ENA

Cucurbita pepo subsp. pepo cultivar:MU-CU-16

Project description:Comparative transcriptome analysis of novel salinity-tolerant mutants in Cucurbita pepo

| PRJNA1019293 | ENA

Small RNA Solexa sequencing of 4 Plant Species in the Cucurbitaceae family

Project description:Total RNA was isolated from different tissues (leaf, stem and flesh, rind and placenta of the fruits) using TRIzol reagent and small RNA libraries were generated from four cucurbit species: bottle gourd (Lagenaria siceraria (accession Grif 1617 collection from India)), Cucurbita moschata (accession Grif 14244 Early Butternut) Cucurbita pepo (accession NSL98075 Table King), and watermelon (Citrullus lanatus var. lanatus) (PI 438676 Charleston Grey) by pooling equimolar amounts of total RNA from the aforesaid tissues. Construction of small RNA libraries from size fractionated RNA was carried out as described previously. In brief, small RNA fractions of 18–28 nt were isolated from 15% denaturing polyacrylamide gels and sequentially ligated to 5? and 3? RNA adapters. Small RNAs ligated with adapters were converted to DNA by RT-PCR following Solexa protocol. The final PCR product was gel purified and sequenced by Genome Analyser II (Illumina). Examination of small RNA transcriptomes in four plants species using Illumina/Solexa GA-II.

2012-08-02 | E-GEOD-38176 | biostudies-arrayexpress

Cucurbita pepo subsp. pepo

Project description:Cucurbita pepo subsp. pepo Raw sequence reads

| PRJNA307078 | ENA

Cucurbita pepo subsp. pepo

Project description:Cucurbita pepo subsp. pepo Raw sequence reads

| PRJNA400686 | ENA

Cucurbita pepo

Project description:Cucurbita pepo Organism overview

| PRJNA80337 | ENA

Project description:Cucurbita pepo morphotypes resequencing

| PRJNA523120 | ENA