Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq dataset as part of HGSVC3

ABSTRACT: RNA-Seq dataset as part of HGSVC3

PROVIDER: PRJEB75192 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12944332.fastq.gz	Fastqsanger.gz
	ERR12944333.fastq.gz	Fastqsanger.gz
	ERR12944334.fastq.gz	Fastqsanger.gz
	ERR12944335.fastq.gz	Fastqsanger.gz
	ERR12944336.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

Hi-C dataset as part of HGSVC3

Project description:Hi-C dataset as part of HGSVC3

| PRJEB75193 | ENA

ONT-UL dataset as part of HGSVC3

Project description:ONT-UL dataset as part of HGSVC3

| PRJEB75216 | ENA

ONT-UL rebasecalling dataset as part of HGSVC3

Project description:ONT-UL rebasecalling dataset as part of HGSVC3

| PRJEB79122 | ENA

HGSVC3 - PacBio HiFi dataset

Project description:PacBio HiFi datasets as part of HGSVC3.

| PRJEB75190 | ENA

IsoSeq datasets as part of HGSVC3

Project description:IsoSeq datasets as part of HGSVC3

| PRJEB75191 | ENA

RNA-seq dataset for MPNST cell lines

Project description:RNA-seq dataset for MPNST cell lines

| PRJNA593502 | ENA

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6 (NMR assay)

Project description:<p>Gene expression is a biological process regulated at different molecular levels, including chromatin accessibility, transcription, and RNA maturation and transport. In addition, these regulatory mechanisms have strong links with cellular metabolism. Here we present a multi-omics dataset that captures different aspects of this multi-layered process in yeast. We obtained RNA-seq, metabolomics, and H4K12Ac ChIP-seq data for wild-type and mip6delta strains during a heat-shock time course. Mip6 is an RNA-binding protein that contributes to RNA export during environmental stress and is informative of the contribution of post-transcriptional regulation to control cellular adaptations to environmental changes. The experiment was performed in quadruplicate, and the different omics measurements were obtained from the same biological samples, which facilitates the integration and analysis of data using covariance-based methods. We validate our dataset by showing that ChIP-seq, RNA-seq and metabolomics signals recapitulate existing knowledge about the response of ribosomal genes and the contribution of trehalose metabolism to heat stress.</p>

2020-02-14 | MTBLS1320 | MetaboLights

RNA-Seq Analysis

Project description:RNA-Seq analysis carried out in three different backcrosses based on Iberian breed with Landrace, Pietrain and Duroc breeds

2017-10-31 | PRJEB23068 | EVA

HGSVC3 - hifiasm De Novo Assemblies

Project description:HGSVC3 - hifiasm De Novo Assemblies

| PRJEB83624 | ENA

HGSVC3 - Verkko De Novo Assemblies

Project description:HGSVC3 - Verkko De Novo Assemblies

| PRJEB76276 | ENA