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DaBelVisc

ABSTRACT: Bellardia viscosa (yellow bartsia)

PROVIDER: PRJEB76753 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR13317820_1.fastq.gz	Fastqsanger.gz
	ERR13317820_2.fastq.gz	Fastqsanger.gz
	ERR13317821_1.fastq.gz	Fastqsanger.gz
	ERR13317821_2.fastq.gz	Fastqsanger.gz
	ERR13304138.fastq.gz	Fastqsanger.gz

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daBelVisc

Project description:Bellardia viscosa (yellow bartsia), genomic and transcriptomic data

| PRJEB76752 | ENA

Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis.

Project description:Aliivibrio wodanis and Moritella viscosa have often been isolated together from fish with winter ulcer. Little is known about the interaction between the two bacterial species and how the presence of one bacterial species affects the behaviour of the other. The impact on bacterial growth in co-culture was investigated in vitro, and the presence of A. wodanis has a strong inhibitorial effect on M. viscosa. Further, we have sequenced the complete genomes of these two marine Gram-negative species, and have performed transcriptome analysis of the bacterial gene expression levels from in vivo samples. Using bacterial implants in the fish abdomen, we demonstrate that the presence of A. wodanis is altering the gene expression levels of M. viscosa compared to when the bacteria are implanted separately. The impeding effect on growth and the change in the global gene expression pattern of M. viscosa when the two pathogens co-exists is discussed in this paper.

2014-11-30 | E-MTAB-2851 | biostudies-arrayexpress

Bartsia

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Bellardia pandia

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Differential expression of miRNAs and mRNAs in Moritella viscosa challenge Atlantic salmon

Project description:Moritella viscosa is a bacterial pathogen causing winter-ulcer disease in Atlantic salmon. The lesions on affected fish lead to increased mortality, decreased fish welfare, and inferior meat quality in farmed salmon. MicroRNAs (miRNAs) are small non-coding RNAs involved in post-transcriptional regulation by guiding the miRNA induced silencing complex to specific mRNA transcripts (target genes). The goal of this study was to identify miRNAs responding to Moritella viscosa in salmon by investigating miRNA expression in head-kidney and the muscle/skin from lesion sites caused by the pathogen. Protein coding gene expression was investigated by microarray analysis in the same materials.

2022-08-14 | GSE211004 | GEO

Neobartsia inaequalis

Project description:Bartsia inaequalis Chloroplast Genome sequencing

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Significance of zinc on skin molecular signatures in Atlantic salmon with Winter ulcer disease

Project description:Vaccinated seawater adapted Atlantic salmon (average weight ~340 g) fed with variable levels of zinc were infected with Moritella viscosa at VESO Vikan. Early responses in skin to infection were investigated 4 days post challenge. Effect of chronic ulceration was investigated 35 days post challenge.

2021-04-09 | GSE171738 | GEO

Moritella viscosa

Project description:Moritella viscosa overview

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