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IcPlaResi

ABSTRACT: Platyrhinus resinosus (cramp-ball fungus weevil)

PROVIDER: PRJEB77438 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR13363409_1.fastq.gz	Fastqsanger.gz
	ERR13363409_2.fastq.gz	Fastqsanger.gz
	ERR13362622.fastq.gz	Fastqsanger.gz
	ERR13362623.fastq.gz	Fastqsanger.gz
	ERR13362624.fastq.gz	Fastqsanger.gz

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icPlaResi

Project description:Platyrhinus resinosus (cramp-ball fungus weevil), genomic and transcriptomic data

| PRJEB77437 | ENA

Kinome-wide RNAi screen uncovers role of Ballchen in maintenance of gene activation by trithorax group in Drosophila

Project description:We report an ex vivo kinome-wide RNAi screen in Drosophila aimed to identify cell signaling genes that facilitate trxG to counteract PcG mediated repression. From the list of trxG candidates, Ballchen (BALL), a histone kinase, known to phosphorylate histone H2A at threonine 119 (H2AT119p), was characterized as a trxG regulator. BALL co-localizes with Trithorax on chromatin and depletion of BALL results in increased H2AK118 ubiquitination, a histone mark central to PcG mediated gene silencing. Moreover, analysis of genome-wide binding profile of BALL shows an overlap with 85% known binding sites of TRX across the genome. Both BALL and TRX are highly enriched at actively transcribed genes, which also correlate with presence of H3K4me3 and H3K27ac. We propose that BALL mediated signal positively contributes to the maintenance of gene activation by trxG by counteracting the repressive effect of PcG.

2021-01-29 | GSE165685 | GEO

Interior Spruce_Bark_PissodesStrobi _Herbivory

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16S rRNA community profiling of the gut of the African Palm weevil

Project description:To explore the bacterial community profile of the gut of the African palm weevil and to identify the abundance and diversity of lignin degradation-associated bacteria in each gut segment.

2025-01-01 | E-MTAB-13719 | biostudies-arrayexpress

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Project description:Transcript profiles of Phanerochaete chrysosporium grown on ball-milled aspen or ball-milled pine were analyzed. Array design based on the DoE's Joint Genome Institute's v2.1 annotation. Goal is to define genes involved in lignocellulose degradation.

2011-06-02 | GSE27941 | GEO

Postia placenta MAD-698 gene expression in ball-milled aspen or ball-milled pine medium

Project description:Transcript profiles of Postia placenta grown on media containing ball-milled aspen or ball-milled pine as the sole carbon source were analyzed. Array design was based on the DoE's Joint Genome Institute's gene models for P. placenta version 1. The research goal is to identtify genes essential for cellulose depolymerization.

2011-06-02 | GSE29656 | GEO

Proteomic analysis of oil palm's response to red palm weevil infestation

Project description:Oil palm leaves were analysed via proteomics approach to identify the differentially-expressed proteins under Red Palm Weevil infestation on the first, third and sixth week post-infestation. The comparison was made among three groups; the control (C), physical wounding by drilling (wounded,W) and the red palm weevil larva infestation (Infested, I)

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Interior Spruce_Bark_PissodesStrobi _Herbivory

Project description:We performed a transcriptome analysis of interior spruce (Picea glauca x engelmannii) bark response to weevil (Pissodes strobi) feeding using 21.8K spruce microarray (that contains 21.8 thousand unique transcripts). This microarray study revealed a large rearrangement of the interior spruce bark transcriptome in response to weevil feeding involving differential expression of close to 20% of the studied transcriptome. RNA was isolated from the bark of interior spruce exposed to weevil feeding and from the bark of untreated trees at three time points (6 hours, 2 days and 2 weeks). Four independent biological replicates were included for treatment and control at each time point. Four hybridizations were performed for treatment and control comparison within each time point (6 hours, 2 days, 2 weeks) and one hybridization was performed for each comparison between time points for both treatment and control (total 18 hybridizations/slides).

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Ball_Python_Nidovirus_Isolate

Project description:Ball pythons experimentally infected with ball python nidovirus

| PRJNA407995 | ENA

Phanaerochaete chrysosporium and Postia placenta gene expression in ball-milled aspen or ball-milled pine medium

Project description:This SuperSeries is composed of the following subset Series: GSE27941: Lignocellulose-induced regulation of Phanaerochaete chrysosporium genes GSE29656: Postia placenta MAD-698 gene expression in ball-milled aspen or ball-milled pine medium Refer to individual Series

2011-06-02 | E-GEOD-29659 | biostudies-arrayexpress

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