Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GfPanStip

ABSTRACT: Panellus stipticus (bitter oysterling), genomic and transcriptomic data

PROVIDER: PRJEB77591 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13382515.fastq.gz	Fastqsanger.gz
	ERR13363480_1.fastq.gz	Fastqsanger.gz
	ERR13363480_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

gfPanStip

Project description:Panellus stipticus (bitter oysterling)

| PRJEB77592 | ENA

Panellus stipticus strain:KUC8834

Project description:Panellus stipticus strain:KUC8834 Genome sequencing

| PRJNA252871 | ENA

Panellus stipticus strain:KUC8834

Project description:Panellus stipticus strain:KUC8834 Transcriptome or Gene expression

| PRJNA250627 | ENA

Panellus stipticus strain:LUM

Project description:Panellus stipticus strain:LUM Transcriptome or Gene expression

| PRJNA250904 | ENA

RNA-Seq on Malus domestica Braeburn x Cameo lines resistant and susceptible to bitter pit disorder

Project description:Bitter pit is the most important physiological disorder affecting apples. In order to ascertain the genetic bases of its incidence in apple fruit, a mapping population of ‘Braeburn’ (susceptible to bitter pit) × ‘Cameo’ (resistant to bitter pit) cultivars was used to map the trait over two growing seasons. RNA-Seq on pools of RNA extracted from fruits of three resistant and three susceptible to bitter pit progenies at post-fertilization and full maturity stages, permitted us to identify a number of candidate genes underlying genetic resistance/susceptibility to bitter pit.

2018-06-12 | E-MTAB-6190 | biostudies-arrayexpress

Inflammation induces bitter taste oversensitization via epigenetic changes in Tas2r gene clusters

Project description:T2R bitter receptors, encoded by Tas2r genes, are not only critical for bitter taste signal transduction but also important for defense against bacteria and parasites. However, little is known about whether and how Tas2r gene expression are regulated. Here, using single-cell assays for transposase-accessible chromatin with sequencing (scATAC-seq), we found that the chromatin accessibility of Tas2rs was highly cell type specific and lipopolysaccharide (LPS)-induced inflammation increased the accessibility of many Tas2rs. scATAC-seq also revealed substantial chromatin remodeling in immune response genes in taste tissue stem cells, suggesting potential long-term effects. Together, our results suggest an epigenetic mechanism connecting inflammation, Tas2r gene regulation, and altered bitter taste, which may explain heightened bitter taste that can occur with infections and cancer treatments.

2023-05-25 | GSE213404 | GEO

Momordica charantia

Project description:Raw data of bitter gourd

| PRJNA1057972 | ENA

Project description:mRNA data of bitter gourd

| PRJNA598964 | ENA

Panellus stipticus

Project description:Panellus stypticus overview

| PRJNA251493 | ENA

Next-Generation Sequencing Facilitates Quantitative Analysis of Two Kinds of Chenopodium quinoa Transcriptomes

Project description:We generated 95.37 Gb of high-quality sequencing data (~7.95 Gb per sample). The analysis showed differences of transcriptomes between the common white sweet quinoa and the yellow bitter quinoa. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in taste of quinoa fruit.Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to the accumulation of bitter saponins in C. quinoa fruits.

2021-09-17 | GSE139174 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data