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Strand-specific RNA-sequencing and manual re-annotation of Toxoplasma gondii VEG and Neospora caninum LIV genomes

ABSTRACT: This is a genome assembly third party annotation of Toxoplasma gondii VEG strain based on strand-specific RNA-sequencing and manual re-annotation identifying novel features of UTRs and non-coding transcripts.

PROVIDER: PRJEB7873 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR690605_1.fastq.gz	Fastqsanger.gz
	ERR690605_2.fastq.gz	Fastqsanger.gz
	ERR690606_1.fastq.gz	Fastqsanger.gz
	ERR690606_2.fastq.gz	Fastqsanger.gz
	ERR701180_1.fastq.gz	Fastqsanger.gz

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Strand-specific RNA-sequencing and manual re-annotation of Toxoplasma gondii VEG and Neospora caninum LIV genomes

Project description:This is a genome assembly third party annotation of Neospora caninum LIV strain based on strand-specific RNA-sequencing and manual re-annotation identifying novel features of UTRs and non-coding transcripts.

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[E-MTAB-549] Neospora caninum RNAseq

Project description:Recent advances in high throughput sequencing methodologies allow the opportunity to probe in depth the transcriptomes of organisms including N. caninum. In this project, we are using Illumina sequencing technology to analyze the transcriptome (RNA-Seq) of experimentally accessible stages (e.g. tachyzoites at different times points) of N. caninum NCLiv. The aim is to make transcriptional landscape maps at different time points at different life cycle stages of N. caninum and compare it with equivalent datasets from the closely related parasite Toxoplasma gondii. ArrayExpress Release Date: 2011-02-08 Person Roles: submitter Person Last Name: Service Person First Name: Submission Person Mid Initials: Person Email: datahose@sanger.ac.uk Person Phone: Person Address: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom Person Affiliation: Wellcome Trust Sanger Institute Person Roles: Investigator Person Last Name: Reid Person First Name: Adam Person Mid Initials: Person Email: ar11@sanger.ac.uk Person Phone: 01223 834244 Person Address: Wellcome Trust Genome Campus,Hinxton,Cambridge. CB10 1SA UK Person Affiliation: Wellcome Trust Sanger Institute Person Roles: Project Coordinator Person Last Name: Sanders Person First Name: Mandy Person Mid Initials: J Person Email: mjs@sanger.ac.uk Person Phone: 01223 834244 Person Address: Wellcome Trust Genome Campus,Hinxton,Cambridge. CB10 1SA UK Person Affiliation: Wellcome Trust Sanger Institute

2011-07-14 | GSE30613 | GEO

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