Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Capsella orientalis leaf transcriptome data

ABSTRACT: Capsella orientalis leaf transcriptome data

PROVIDER: PRJEB7879 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR690374_1.fastq.gz	Fastqsanger.gz
	ERR690374_2.fastq.gz	Fastqsanger.gz
	ERR690375_1.fastq.gz	Fastqsanger.gz
	ERR690375_2.fastq.gz	Fastqsanger.gz
	ERR690376_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Imprinted genes in Three Capsella Species

Project description:Genome-wide identification of imprinted genes in Capsella grandiflora and Capsella orientalis

2019-03-26 | GSE103209 | GEO

Capsella orientalis

Project description:Capsella orientalis Genome sequencing

| PRJNA245911 | ENA

Comprehensive Tissue Transcriptome of Bombina orientalis

Project description:To construct the reference transcriptome of B. orientalis, we collected mRNAs of multiple tissues from adult animal.

2020-12-27 | GSE163874 | GEO

Non-reciprocal Interspecies Hybridization Barriers in the Capsella Genus are Established in the Endosperm

Project description:We described in this work the reproductive barrier between Capsella rubella and Capsella grandiflora leading to hybrid seed inviability. The transcriptome revealed a similar response to the one observed in interploidy hybrid seeds.

2015-03-28 | GSE67359 | GEO

Capsella

Project description:Capsella overview

| PRJNA195512 | ENA

Polymerase IV Plays a Crucial Role in Pollen Development in Capsella

Project description:In Arabidopsis thaliana, DNA-dependent RNA polymerase IV (Pol IV) is required for the formation of transposable element (TE)-derived small RNA (sRNA) transcripts. These transcripts are processed by DICER-LIKE3 into 24-nt small interfering RNAs (siRNAs) that guide RNA-directed DNA methylation. In the pollen grain, Pol IV is also required for the accumulation of 21/22-nt epigenetically activated siRNAs (easiRNAs), which likely silence TEs via post-transcriptional mechanisms. Despite this proposed role of Pol IV, its loss of function in Arabidopsis does not cause a discernable pollen defect. Here, we show that the knockout of NRPD1, encoding the largest subunit of Pol IV in the Brassicaceae species Capsella rubella, caused post-meiotic arrest of pollen development at the microspore stage. As in Arabidopsis, all TE-derived siRNAs were 2 depleted in Capsella nrpd1 microspores. In the wild-type background, the same TEs produced 21/22-nt and 24-nt siRNAs; these processes required Pol IV activity. Arrest of Capsella nrpd1 microspores was accompanied by the deregulation of genes targeted by Pol IV-dependent siRNAs. TEs were much closer to genes in Capsella rubella compared to Arabidopsis thaliana, perhaps explaining the essential role of Pol IV in pollen development in Capsella. Our discovery that Pol IV is functionally required in Capsella microspores emphasizes the relevance of investigating different plant models.

2020-01-23 | GSE136847 | GEO

Capsella

Project description:Capsella rubella 1504 and Capsella grandiflora 926. Genome sequencing

| PRJNA255453 | ENA

Capsella rubella

Project description:Capsella rubella Transcriptome or Gene expression

| PRJNA392711 | ENA

Capsella grandiflora

Project description:Capsella grandiflora Transcriptome or Gene expression

| PRJNA312156 | ENA

Capsella grandiflora

Project description:Capsella grandiflora Transcriptome or Gene expression