Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DrHerSpho

ABSTRACT: Heracleum sphondylium, genomic and transcriptomic data

PROVIDER: PRJEB80400 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13725938.fastq.gz	Fastqsanger.gz
	ERR13725939.fastq.gz	Fastqsanger.gz
	ERR13725940.fastq.gz	Fastqsanger.gz
	ERR13732194_1.fastq.gz	Fastqsanger.gz
	ERR13732194_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

drHerSpho

Project description:Heracleum sphondylium

| PRJEB80401 | ENA

Heracleum hemsleyanum isolate:Heracleum | cultivar:hemsleyanum

Project description:Heracleum hemsleyanum isolate:Heracleum | cultivar:hemsleyanum Genome sequencing

| PRJNA755911 | ENA

Heracleum hemsleyanum

Project description:Heracleum hemsleyanum overview

| PRJNA1051260 | ENA

Heracleum sosnowskyi

Project description:Heracleum sosnowskyi study

| PRJNA928505 | ENA

Heracleum moellendorffii

Project description:Heracleum moellendorffii overview

| PRJNA541761 | ENA

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

Heracleum rechingeri

Project description:Heracleum rechingeri Genome sequencing

| PRJNA326061 | ENA

idAnoFune

Project description:Anopheles funestus, genomic and transcriptomic data

| PRJEB51751 | ENA

Porites lobata, genomic and transcriptomic data

Project description:Porites lobata, genomic and transcriptomic data

| PRJEB51771 | ENA