Project description:During maturation seeds acquire several physiological traits to enable them to survive drying and disseminate the species. Few studies have addressed the regulatory networks controlling acquisition of these traits at the tissue level particularly in endospermic seeds such as tomato, which matures in a fully hydrated environment and does not undergo maturation drying. Using temporal RNA-seq analyses of the different seed tissues during maturation, gene network and trait-based correlations were used to explore the transcriptome signatures and identify hubs associated with desiccation tolerance, longevity, germination under water stress and dormancy.

2020-12-11 | GSE155838 | GEO

Medicago truncatula Seed Protein Plasticity in Response to the Environment

Project description:Because extreme environmental events are expected to increase with climate change, identifying candidate genes for stabilizing the protein composition of legume seeds or optimizing it in a given environment becomes increasingly important. To elucidate the genetic determinants of seed protein plasticity, major seed proteins from 200 ecotypes of Medicago truncatula grown in four contrasted environments were quantified after one-dimensional electrophoresis. Major protein bands were excised from the seed protein profile of five genotypes to identify protein variants.

2021-08-17 | PXD022244 | Pride

Pumpkin seed microbiome

Project description:Breeding shapes the seed microbiome of future generations in Cucurbita pepo

| PRJEB41779 | ENA

Tomato microbiome

Project description:Biotic and abiotic stress factors induce microbiome shifts and enrichment of distinct beneficial bacteria in tomato roots

| PRJEB48124 | ENA

Tomato CRISPR-Edited Microbiome Associated

Project description:Tomato CRISPR-Edited Microbiome Associated Raw sequence reads

| PRJNA1057279 | ENA

Transcriptome analysis of the seed weight plasticity in Brassica napus

Project description:Transcriptome analysis of the seed weight plasticity in Brassica napus

| PRJNA716953 | ENA

RNA sequencing of tomato seed tissues matured in different environments

Project description:RNA sequencing of tomato seed tissues matured in different environments

| PRJNA666089 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data