Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

LaPotNata

ABSTRACT: Potamogeton natans, genomic and transcriptomic data

PROVIDER: PRJEB84431 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR14172010_1.fastq.gz	Fastqsanger.gz
	ERR14172010_2.fastq.gz	Fastqsanger.gz
	ERR14172319_1.fastq.gz	Fastqsanger.gz
	ERR14172319_2.fastq.gz	Fastqsanger.gz
	ERR14151151.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

laPotNata

Project description:Potamogeton natans

| PRJEB84432 | ENA

Potamogeton natans

Project description:Potamogeton natans overview

| PRJNA1236478 | ENA

laPotLuce

Project description:Potamogeton lucens, genomic and transcriptomic data

| PRJEB91194 | ENA

laPotComp

Project description:Potamogeton compressus, genomic and transcriptomic data

| PRJEB91198 | ENA

pySymNata

Project description:Symbiodinium natans, genomic and transcriptomic data

| PRJEB87442 | ENA

laPotPusi

Project description:Potamogeton pusillus (small pondweed), genomic and transcriptomic data

| PRJEB91196 | ENA

laPotNodo

Project description:Potamogeton nodosus (Loddon Pondweed), genomic and transcriptomic data

| PRJEB91087 | ENA

laPotTric

Project description:Potamogeton trichoides (hairlike pondweed), genomic and transcriptomic data

| PRJEB91085 | ENA

laPotCris

Project description:Potamogeton crispus (curly-leaf pondweed), genomic and transcriptomic data

| PRJEB91200 | ENA

Nucleomorph small RNAs in cryptophyte and chlorarachniophyte algae

Project description:The regulation of gene expression and RNA maturation underlies fundamental processes such as cell homeostasis, development and stress acclimation. The biogenesis and modification of RNA is tightly controlled by an array of regulatory RNAs and nucleic acid-binding proteins. While the role of small RNAs (sRNAs) in gene expression has been studied in-depth in select model organisms, little is known about sRNA biology across the eukaryotic tree of life. We used deep sequencing to explore the repertoires of sRNAs encoded by the miniaturized, endosymbiotically-derived ‘nucleomorph’ genomes of two single-celled algae, the cryptophyte Guillardia theta and the chlorarachniophyte Bigelowiella natans. A total of 32.3 and 35.3 million reads were generated from G. theta and B. natans, respectively. In G. theta, we identified nucleomorph U1, U2 and U4 spliceosomal RNAs (snRNAs) as well as 11 C/D box small nucleolar RNAs (snoRNAs), five of which have potential plant and animal homologs. The snoRNAs are predicted to perform 2’-O methylation of rRNA (but not snRNA). In B. natans, we found previously undetected RNA components of the nucleomorph spliceosome (U4 snRNA) and ribosome (5S rRNA), along with six orphan sRNAs. Analysis of chlorarachniophyte snRNAs shed light on the removal of the miniature 18-21 nt introns found in B. natans nucleomorph genes. Neither of the nucleomorph genomes appears to encode RNA pseudouridylation machinery, and U5 snRNA cannot be found in the cryptophyte. Considering the central roles of U5 snRNA and RNA modifications in other organisms, cytoplasm-to-nucleomorph RNA shuttling in cryptophyte algae is a distinct possibility.

2019-01-09 | GSE124831 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data