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NIL-TDS

ABSTRACT: Native Index Ligation-Based Targeted Degradome Sequencing (NIL-TDS) for High Precision Quantification of small RNA Slicing Activity

PROVIDER: PRJEB85122 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	ERR14185200.fastq.gz	Fastqsanger.gz
	ERR14185201.fastq.gz	Fastqsanger.gz
	ERR14185202.fastq.gz	Fastqsanger.gz
	ERR14185203.fastq.gz	Fastqsanger.gz
	ERR14185204.fastq.gz	Fastqsanger.gz

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Project description:Tissue-specific transcriptional profiling of the abscission layer (AL) at the base of young flower in rice using laser micro-dissection: NIL(qSH1) vs. Nipponbare. We used two rice varieties, NIL(qSH1) and Nipponbare. NIL(qSH1) is a nearly isogenic line containing the seed shattering gene qSH1. Seed shattering is easy in NIL(qSH1), but it is not in Nipponbare. So, we used some stages of young flower in NIL(qSH1) and some in Nipponbare. Four regions: 1. abscission layer region of NIL(qSH1), 2. upper abscission region of NIL(qSH1), 3. lower abscission layer region of NIL(qSH1), and 4. abscission layer region of Nipponbare. Sample experiments: NIL(qSH1) AL vs. Nipponbare AL, NIL(qSH1) AL vs. NIL(qSH1) upper region of AL, and NIL(qSH1) AL vs. NIL(qSH1) lower region of AL.

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