Project description:The aim of the project is to determine the expression profile of Arabidopsis DEFL during sexual reproduction, in particular seed development. To this aim, we generated a customised Affymetrics array that was hybridized with labeled cDNA synthetised from total RNA. Plant were grown in a control environment chamber and were pollinated manually to precisely generate different stages of seed development. Samples were collected in tripicates.
Project description:In this project, we developed a data resource based on the German winter oilseed rape cultivar Express 617. Plants were grown under controlled environmental conditions in the container-based system of the IPK PhenoSphere in 2020-2021. The dataset comprises gene expression data generated by RNA sequencing of different seed tissues across five stages of seed development, spanning early embryo/seed development, seed filling, and seed maturation. In the first stage (pre-storage), whole seeds were analysed. In the later four stages, developing seeds were dissected into four organs/tissues (SC = seed coat, IC = inner cotyledon, OC = outer cotyledon, and RA = radicle). This dataset (mRNA sequencing) is part of a series of multi-omics data generated in the frame of the AVATARS project.
Project description:This project aims to investigate the effects of 3% oxygen environments on THP-1 cells as compared to 20% oxygen environments. THP-1 cells (pre-seed) were divided into 2 different conditions and cultured in 20% and 3% oxygen environments for 24h. Samples were performed in triplicates.