Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sarno River Plume

ABSTRACT: Four metagenomes and four metatranscriptomes sampled along a transect in the plume of the Sarno River in the Gulf of Naples (Italy).

PROVIDER: PRJEB9208 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR952451_1.fastq.gz	Fastqsanger.gz
	ERR952451_2.fastq.gz	Fastqsanger.gz
	ERR953369_1.fastq.gz	Fastqsanger.gz
	ERR953369_2.fastq.gz	Fastqsanger.gz
	ERR953370_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Gene Expression in Prokaryotic Microbial Assemblages Across Salinity Gradients in the Columbia River Coastal Margin

Project description:Analysis of microbial gene expression in response to physical and chemical gradients forming in the Columbia River, estuary, plume and coastal ocean was done in the context of the environmental data base. Gene expression was analyzed for 2,234 individual genes that were selected from fully sequenced genomes of 246 prokaryotic species (bacteria and archaea) as related to the nitrogen metabolism and carbon fixation. Seasonal molecular portraits of differential gene expression in prokaryotic communities during river-to-ocean transition were created using freshwater baseline samples (268, 270, 347, 002, 006, 207, 212). Total RNA was isolated from 64 filtered environmental water samples collected in the Columbia River coastal margin during 4 research cruises (14 from August, 2007; 17 from November, 2007; 18 from April, 2008; and 16 from June, 2008), and analyzed using microarray hybridization with the CombiMatrix 4X2K format. Microarray targets were prepared by reverse transcription of total RNA into fluorescently labeled cDNA. All samples were hybridized in duplicate, except samples 212 and 310 (hybridized in triplicate) and samples 336, 339, 50, 152, 157, and 199 (hybridized once). Sample location codes: number shows distance from the coast in km; CR, Columbia River transect in the plume and coastal ocean; NH, Newport Hydroline transect in the coastal ocean at Newport, Oregon; AST and HAM, Columbia River estuary locations near Astoria (river mile 7-9) and Hammond (river mile 5), respectively; TID, Columbia River estuary locations in the tidal basin (river mile 22-23); BA, river location at Beaver Army Dock (river mile 53) near Quincy, Oregon; UP, river location at mile 74.

2010-09-10 | E-GEOD-18303 | biostudies-arrayexpress

Sheldrake Lake, River and plume (Nunavik, Canada) amplicon sequences.

Project description:Sheldrake Lake, River and plume (Nunavik, Canada) amplicon sequences. Raw sequence reads

| PRJNA803180 | ENA

Amazon River plume small pigmented protist communities, May 2018

Project description:Amazon River plume small pigmented protist communities, May 2018 Raw sequence reads

| PRJNA701187 | ENA

Transcriptomic plasticity of mesophotic corals among natural populations and transplants of Montastraea cavernosa in the Gulf of Mexico and Belize

Project description:Variation in transciptomic patterns between shallow and mesophotic corals was assessed using tag-based RNA-Seq (Tag-Seq) through analysis of natural populations across four regions in the Gulf of Mexico. Additionally, colonies were fate-tracked and repeatedly sampled to assess changes in gene expression through time in a transplant experiment between shallow and mesophotic depth zones at West and East Flower Garden Banks. This repository contains the raw .fastq.gz files for all sequenced samples.

2019-12-31 | GSE107688 | GEO

Sulfurimonas sp. NW9 isolate:hydrothermal Plume

Project description:Sulfurimonas sp. NW9 isolate:hydrothermal Plume Genome sequencing

| PRJNA811251 | ENA

Sulfurimonas sp. NW15 isolate:hydrothermal Plume

Project description:Sulfurimonas sp. NW15 isolate:hydrothermal Plume Genome sequencing

| PRJNA811253 | ENA

Subarctic rivers and brackish plume

Project description:Subarctic rivers and brackish plume, 16S and 18S amplicons sequencing

| PRJNA744875 | ENA

Rainbow plume microbes

Project description:Patterns of (trace) metals and microorganisms in the Rainbow hydrothermal vent plume at the Mid-Atlantic Ridge