Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Impact of long-term fertilization on bacterial communities in one at the long term static fertilization experiment in Bad Lauchstadt

PROVIDER: PRJEB9307 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR868542.fastq.gz	Fastqsanger.gz
	ERR868543.fastq.gz	Fastqsanger.gz
	ERR868544.fastq.gz	Fastqsanger.gz
	ERR868545.fastq.gz	Fastqsanger.gz
	ERR868546.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Project description:Impact of long-term fertilization on fungal communities in one at the long term static fertilization experiment in Bad Lauchstadt

| PRJEB9305 | ENA

Grazing-resistance, antibiotic production and internal carbon cycling are characteristics for bacteria that prevail in long-term enclosure experiments

Project description:Enclosure experiments are frequently used to investigate the impact of changing environmental conditions on microbial assemblages. Yet, the question how individual members of bacterial communities respond to challenges posed by the incubation itself remained unanswered. We used metaproteomic profiling, 16S rRNA gene analysis and high nucleic acid content analysis to monitor bacterial communities during long-term incubations (55 days) under marine (M1), mesohaline (M2) and oligohaline (M3) conditions with and without the addition of terrestrial dissolved organic matter. Our results showed that early in the experiment (after one week, T2), bacterial communities were highly diverse and their composition differed significantly between marine, mesohaline and oligohaline conditions. Controls (BS) and tDOM-treated samples (FKB) showed notable differences at this stage. In contrast, in the late phase of the experiment (after 55 days, T6), bacterial communities in both, manipulated and untreated marine and mesohaline enclosures were quite similar to each other and were dominated by gammaproteobacterial Spongiibacter. In the oligohaline enclosure, the actinobacterial hgc-I clade was very abundant in this phase. Our findings suggest that individual capacities, e.g. grazing-resistance, antibiotics production, and the ability to access alternative carbon sources may enable Spongiibacter and hgc-I clade members to successfully prevail during long-term incubations. Bacterial community composition in enclosure experiments thus seems to be strongly influenced by the individual inherent bacterial strategies to cope with the incubation as such. Researchers intending to investigate the effects of manipulation on complex microbial communities may therefore want to use short incubation periods or sophisticated systems that avoid these unspecific effects of long-term experiments.

2019-07-09 | PXD011160 | Pride

Mengcheng long-term fertilization experiment

Project description:Impact of long-term fertilization on soil bacterial community

| PRJEB7295 | ENA

LTSFE-FUN

Project description:Impact of long-term fertilization on composition of bacterial and fungal communities

| PRJEB9303 | ENA

Project description:Effect of long-term fertilization on soil bacterial communities

| PRJNA435513 | ENA

Effect of long term fertilization strategies on soil bacterial communities

Project description:Effect of long term fertilization strategies on soil bacterial communities

| PRJEB33480 | ENA

Project description:Study of bacterial communities in Ultisol under long-term fertilization.

| PRJNA1009978 | ENA

soil metagenome

Project description:Prokaryotic community structure of long-term fertilization experiment fields

| PRJDB7629 | ENA

Project description:archived soil samples from a long-term fertilization experiment

| PRJNA726588 | ENA

The influence of long-term copper contaminated agricultural soil at different pH levels on microbial communities and springtail transcriptional regulation

Project description:Copper has long been applied for agricultural practices. Like other metals, copper is highly persistent in the environment and biologically active long after its use has ceased. Here we present a unique study on the long-term effects (27 years) of copper and pH on soil microbial communities and on Folsomia candida, an important representative of the soil macrofauna, in an experiment with a full factorial, random block design. Bacterial communities were mostly affected by pH. These effects were prominent in Acidobacteria, while Actinobacteria and Gammaroteobacteria communities were affected by original and bioavailable copper. Reproduction and survival of the collembolan F. candida was not affected by the studied copper concentrations. However, the transcriptomic responses to copper reflected a mechanism of copper transport and detoxification, while pH exerted effects on nucleotide and protein metabolism and (acute) inflammatory response. We conclude that microbial community structure explained the history of copper contamination, while gene expression analysis of F. candida is associated with the current level of bioavailable copper. Combined analysis at various trophic levels is highly relevant in the context of assessing long-term soil pollution.

2012-04-04 | GSE29644 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data