Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil bacterial community composition in Hornsund fjord, Southwest Spitsbergen

ABSTRACT: Soil bacterial community composition in Hornsund fjord, Southwest Spitsbergen

PROVIDER: PRJEB9513 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR906724_1.fastq.gz	Fastqsanger.gz
	ERR906724_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

bacterial community composition

Project description:bacterial community composition Raw sequence reads

| PRJNA1065110 | ENA

bacterial community composition of Hyalesthes obsoletus

Project description:bacterial community composition of cicada

| PRJEB13010 | ENA

Microbial community composition in sediments resists perturbation by nutrient enrichment

Project description:Functional redundancy in bacterial communities is expected to allow microbial assemblages to survive perturbation by allowing continuity in function despite compositional changes in communities. Recent evidence suggests, however, that microbial communities change both composition and function as a result of disturbance. We present evidence for a third response: resistance. We examined microbial community response to perturbation caused by nutrient enrichment in salt marsh sediments using deep pyrosequencing of 16S rRNA and functional gene microarrays targeting the nirS gene. Composition of the microbial community, as demonstrated by both genes, was unaffected by significant variations in external nutrient supply, despite demonstrable and diverse nutrient–induced changes in many aspects of marsh ecology. The lack of response to external forcing demonstrates a remarkable uncoupling between microbial composition and ecosystem-level biogeochemical processes and suggests that sediment microbial communities are able to resist some forms of perturbation.

2010-11-13 | GSE25227 | GEO

Microbial community composition in sediments resists perturbation by nutrient enrichment

2010-11-13 | E-GEOD-25227 | biostudies-arrayexpress

Bacterial community composition in Panchagavya

Project description:Bacterial community composition in Panchagavya, an organic agriculture input as revealed by Next Generation Sequencing

| PRJEB43256 | ENA

16s Community Composition

Project description:16s Community Composition Raw sequence reads

| PRJNA540057 | ENA

Bacterial community composition (16S rRNA)

Project description:Bacterial diversity , community composition (16S rRNA), odor compounds and fluorescence components of pipe biofilms from drinking water distribution systems

| PRJEB73275 | ENA

bacterial diversity and community composition

Project description:Study of bacterial diversity and community composition in artificial pit mud used for fermentation of Chinese Strong Flavor Liquor

| PRJEB19195 | ENA

soil bacterial community composition with different amendments

Project description:soil bacterial community composition with different amendments Raw sequence reads

| PRJNA601828 | ENA

Phytoplankton community composition and gene expression involved in carbon and nitrogen assimilation

Project description:A functional gene microarray was developed and used to investigate phytoplankton community composition and gene expression in the English Channel. Genes encoding the CO2 fixation enzyme RuBisCO (rbcL) and the nitrate assimilation enzyme nitrate reductase (NR) representing several major groups of phytoplankton were included as oligonucleotide probes on the 'phytoarray'. Five major groups of eukaryotic phytoplankton that possess the Type 1D rbcL gene were detected, both in terms of presence (DNA) and activity (rbcL gene expression). Changes in relative signal intensity among the Type 1D rbcL probes indicated a shift from diatom dominance in the spring bloom to dominance by haptophytes and flagellates later in the summer. Because of the limitations of a smaller database, NR probes detected fewer groups, but due to the greater diversity among known NR sequences, NR probes provided higher phylogenetic resolution than did rbcL probes, and identified two uncultivated diatom phylotypes as the most abundant (DNA) and active (NR gene expression) in field samples. Unidentified chlorophytes and the diatom Phaeodactylum tricornutum were detected at both the DNA and cDNA (gene expression) levels. The reproducibility of the array was evaluated in several ways and future directions for further improvement of probe development and sensitivity are outlined. The phytoarray provides a relatively high resolution, high throughput approach to assessing phytoplankton community composition in marine environments. Keywords: seawater natural assemblages, functional gene expression Two functional genes, nitrate reductase and RuBisCO, 4 - 8 replicate features per array

2010-06-19 | E-GEOD-12742 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data