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Dynamic histone modifications establish the two phase kinetics of glucosinolates against wounding stress in Arabidopsis plant

ABSTRACT: Dynamic histone modifications establish the two phase kinetics of glucosinolates against wounding stress in Arabidopsis plant

PROVIDER: PRJNA1000626 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR25469122_1.fastq.gz	Fastqsanger.gz
	SRR25469122_2.fastq.gz	Fastqsanger.gz
	SRR25469123_1.fastq.gz	Fastqsanger.gz
	SRR25469123_2.fastq.gz	Fastqsanger.gz
	SRR25469124_1.fastq.gz	Fastqsanger.gz

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Dynamic histone modifications establish the two phase kinetics of glucosinolates against wounding stress in Arabidopsis plant

Project description:This study demonstrates that distinct composition of histone modifications between aliphatic and indolic GSL pathway genes contribute to the two phase activation of two different groups of GSL pathway genes in stress condition of Arabidopsis.

2024-01-31 | GSE239725 | GEO

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Project description:Systemic transcriptional responses in Arabidopsis thaliana distal leaves to wounding

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Project description:ra16-01_mkk3_wounding - identification of mkk3-dependent wounding-induced genes - Is MKK3 involved in the transcriptional regulation of wounding-induced genes? - Col and mkk3 KO plants were wounded with a forceps. Leaves were harvested 2h after the stress.

2017-03-10 | GSE95621 | GEO

Transcriptomic analysis of Boswellia sacra wounding stress responses during resin extraction

Project description:Here we report the RNAseq data, related to wounding stress caused for resin production. We extracted RNA from the stem of B. sacra plant collected after 0 day and 30 min of wounding stress (two biological replicates) using the Pure Link Plant RNA reagent kit (Life Technologies, USA) with some modifications and in-house developed HMW RNA extraction method. The de novo assembled transcripts of B. sacra were annotated by performing a BLAST search with the software Blast2GO v.2.6.0 (Conesa et al., 2005). The BLASTx search was done with cut-off E-values of 1.0e−1 and 1.0e−3 against the non-redundant protein sequence database. The same software was used to obtain the gene ontology (GO) information for the assembled transcripts describing different biological processes, molecular function and cellular components.

2019-05-15 | GSE131217 | GEO

wt and opr3 control and systemic wounding

Project description:wt plants (ws) and opr3 mutant plants were wounded Half of the rosette leaves of 6 weeks old plants were wounded by clamping a tweezers across the midvein. RNA was extracted from control and systemic leaves 2 h after wounding, and was subject to affymetrix ATH1 chip. one repeat: wt control, wt systemic wounding, opr3 control, opr3 systemic wounding

2010-12-01 | E-GEOD-14332 | biostudies-arrayexpress

Temporal dynamics of histone modification H3K9/14ac, H3K27ac, H3K4me3, H3K27me3, and H3K36me3 after wounding in Arabidopsis thaliana.

Project description:After wounding in plants, a vast and rapid transcriptional reprogramming takes place. Interestingly, this reprogramming includes the reactivation of developmental regulators that in mature tissue normally are epigenetically repressed. We evaluated which histone modifications are associated with this rapid increase of these developmental regulators.

2019-11-28 | E-MTAB-7611 | biostudies-arrayexpress

Serine protease-mediated wounding identifies localized epidermal wound response genes in Drosophila melanogaster

Project description:We have used trypsin-mediated wounding to amplify the transcriptional response to clean puncture wounding. We studied the transcriptional response of clean puncture wounding and trypsin puncture wounding in relation to unwounded wild-type late-stage embryos. Trypsin puncture wounding generally increases the puncture wounding fold induction relative to unwounded controls.

2013-08-12 | E-MEXP-3755 | biostudies-arrayexpress

Transcriptional response to wounding of Arabidopsis thaliana roots

Project description:Time course transcriptional profiling after wounding of 7 day old Arabidopsis roots, cut into 0.3 mm pieces. Samples were taken at 0 h, 1 h, 3 h, 6 h and 12 h after wounding.

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AtERF#111/ABR1 is involved in the wounding response

Project description:AtERF#111/ABR1 belongs to the group X of the ERF/AP2 transcription factor family (GXERFs) and is shoot specifically induced under submergence and hypoxia. It was described to be an ABA-response repressor, but our data hint at a completely different function. Here we present evidence that AtERF#111 is involved in the wounding response. Expression profiling of ERF#111-overexpressing (OE) plants demonstrates that AtERF#111 is a transcriptional activator of wounding response genes. Furthermore, direct target genes of AtERF#111 were identified by microarray analyses. However, knockout mutants of AtERF#111 only show a slightly reduced wounding response, suggesting the involvement of other GXERFs in wound signaling and repair mechanisms.

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