Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Chinese tongue sole (Cynoglossus semilaevis) skin cell line sequencing

PROVIDER: PRJNA1002619 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25555301_1.fastq.gz	Fastqsanger.gz
	SRR25555301_2.fastq.gz	Fastqsanger.gz
	SRR25555302_1.fastq.gz	Fastqsanger.gz
	SRR25555302_2.fastq.gz	Fastqsanger.gz
	SRR25555303_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Comparative transcriptome profiling of Chinese tongue sole in immune response against Vibrio harveyi infection

Project description:Vibrio harveyi is a major bacterial pathogen that can cause fatal vibriosis in Chinese tongue sole (Cynoglossus semilaevis). To comprehend the molecular mechanisms of C. semilaevis host response against V. harveyi infection, we performed transcriptome (RNA-seq) analysis of C. semilaevis from resistant family and susceptible family.

2019-02-26 | GSE126995 | GEO

Identify and characterize the circular RNAs expressed in in the half-smooth tongue sole (Cynoglossus semilaevis)

Project description:Half-smooth tongue sole (Cynoglossus semilaevis) is a commercially valuable flatfish, ranking among the most valuable fishes in the coastal areas of China. It has an asymmetric body shape with lateralization of the eyes to the same side during metamorphosis as same as the other flatfish species. However, little is known about the function and profile of circRNAs in the half-smooth tongue sole. In this study,a total of 2730 circRNAs were identified from in the fish by deep RNA-sequencing technique.

2017-09-27 | GSE103984 | GEO

Genome-wide identification and prediction of long non-coding RNAs in the half-smooth tongue sole (Cynoglossus semilaevis)

Project description:Half-smooth tongue sole (Cynoglossus semilaevis) is a commercially valuable flatfish, ranking among the most valuable fishes in the coastal areas of China. It has an asymmetric body shape with lateralization of the eyes to the same side during metamorphosis as same as the other flatfish species. However, little is known about the function and profile of lncRNAs in the half-smooth tongue sole. In this study, we carry out a genome-wide review of lncRNAs in the fish by using large-scale deep sequencing.

2017-09-27 | GSE98425 | GEO

Transcriptome data involved in female Chinese tongue sole (Cynoglossus semilaevis)

Project description:Transcriptome data involved in female Chinese tongue sole (Cynoglossus semilaevis)

| PRJNA658653 | ENA

Multi-organ transcriptomic profiles and gene-regulation network underlying vibriosis resistance in tongue sole

Project description:Vibrio spp. are major pathogens responsible for mortality and disease in various marine aquaculture organisms. Effective disease control and genetic breeding strategies rely heavily on understanding host vibriosis resistance mechanisms. The Chinese tongue sole (Cynoglossus semilaevis) is economically vital but suffers from substantial mortalities due to vibriosis. Through continuous selective breeding, we have successfully obtained vibriosis-resistant families of this species. In this study, we conducted RNA-seq analysis on three organs, including liver, spleen and intestine from selected resistant and susceptible tongue soles. Additionally, we integrated these data with our previously published RNA-seq datasets of skin and gill, enabling the construction of organ-specific transcriptional profiles and a comprehensive gene co-expression network elucidating the differences in vibriosis resistance. Furthermore, we identified 12 modules with organ-specific functional implications. Overall, our findings provide a valuable resource for investigating the molecular basis of vibriosis resistance in fish, offering insights into target genes and pathways essential for molecular selection and genetic manipulation to enhance vibriosis resistance in fish breeding programs.

2024-06-26 | GSE270251 | GEO

Project description:The whole-genome resequencing of 350 Chinese tongue sole (Cynoglossus semilaevis)

| PRJNA661967 | ENA

Project description:The whole transcriptome data for different sexual Chinese tongue sole (Cynoglossus semilaevis)

| PRJNA743138 | ENA

Transcriptome data involved in Chinese tongue sole (Cynoglossus semilaevis) sexual growth dimorphism

Project description:Transcriptome data involved in Chinese tongue sole (Cynoglossus semilaevis) sexual growth dimorphism

| PRJNA413516 | ENA

Project description:The whole-genome resequencing of 59 male Chinese tongue sole (Cynoglossus semilaevis)

| PRJNA659138 | ENA

Project description:The whole genome bisulfite sequencing data of different sexual Chinese tongue sole (Cynoglossus semilaevis)

| PRJNA741107 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data