Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Central Indian Ocean Basin Nodule and Sediment Metagenome

ABSTRACT: Central Indian Ocean Basin Nodule and Sediment Metagenome

PROVIDER: PRJNA1003269 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Metaproteomics analysis of microbial structure on the surface of Indian Ocean

Project description:In this study we characterize microbial community features on the surface of Indian Ocean. 11 samples were collected from Indian Ocean and subjected for quantitative metaproteomics analysis for taxonomic and functional analysis. Our results suggested that metabolic tuning at metaproteomics levels enabled microbial community to sustain stable when subjected to environmental perturbations in the oligotrophic ocean.

2023-05-10 | PXD016285 | Pride

Western Indian Ocean giant tortoises

Project description:Western Indian Ocean giant tortoises

| PRJEB51299 | ENA

Indian Ocean seawater sample

Project description:Indian Ocean seawater sample Raw sequence reads

| PRJNA934765 | ENA

Pygoplites diacanthus strain:Indian Ocean Morph

Project description:Pygoplites diacanthus strain:Indian Ocean Morph Genome sequencing

| PRJNA306977 | ENA

The eastern Indian Ocean prokaryotic sequencing

Project description:The eastern Indian Ocean prokaryotic sequencing Raw sequence reads

| PRJNA1030735 | ENA

The eastern Indian Ocean microeukaryotic sequencing

Project description:The eastern Indian Ocean microeukaryotic sequencing Raw sequence reads

| PRJNA1029735 | ENA

metagenomic sequencing of Indian ocean surface water

Project description:metagenomic sequencing of Indian ocean surface water Metagenome

| PRJNA450884 | ENA

Northeastern Indian Ocean metagenome assembly dataset

Project description:Depth-dependent microbial metagenomes sampled in the northeastern Indian Ocean

| PRJEB70490 | ENA

An insight into the prokaryotic diversity from a polymetallic nodule-rich region in the Central Indian Ocean Basin using next generation sequencing approach.

Project description:Deep sea is a vast, dark, and difficult-to-access terrain and is now looked upon as a unique niche harboring diverse microorganism. We used a metataxonomic approach to decipher the microbial diversity present in the water column (surface to near bottom), water overlaying the sediments, and the deep-sea sediments (up to 35 cm) from the Indian Contract Region (ICR) in the Central Indian Ocean Basin (CIOB). Samples were collected from #IRZ (Impact Reference Zone), #PRZ (Potential Reference Zone), and #BC20 (Control site, outside potential mining area) with an average water depth of 5,200 m. 16S rRNA (V3-V4 region) amplicon sequencing on the MiSeq platform resulted in 942,851 ASVs across 65 water and sediment samples. Higher prokaryotic diversity was observed below 200 m in the water column to the seafloor. Proteobacteria was the most dominant bacterial phylum among all the water samples while Firmicutes, Actinobacteria and, Bacteroidota dominated the sediments. Sediment (below 10 cm) was co-dominated by Firmicutes. Thermoplasmata was the dominant archaeal group in the water column while Crenarchaeota was in the sediments. BC20 was less diverse than IRZ and PRZ. Deep Sea microorganisms could play a vital role in the mineralization processes, nutrient cycling, and also different biogeochemical cycles.

| S-EPMC10985493 | biostudies-literature

Microbiomes of the Canada Basin, Arctic Ocean

Project description:Metabolism of microbiomes from the Canada Basin, Arctic Ocean

| PRJEB57575 | ENA