Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean [RNA-seq]

ABSTRACT: Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean [RNA-seq]

PROVIDER: PRJNA1006160 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25655517_1.fastq.gz	Fastqsanger.gz
	SRR25655517_2.fastq.gz	Fastqsanger.gz
	SRR25655518_1.fastq.gz	Fastqsanger.gz
	SRR25655518_2.fastq.gz	Fastqsanger.gz
	SRR25655519_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 129

Similar Datasets

Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean [WGBS]

Project description:Phytophthora root and stem rot (PRR) caused by oomycete pathogens in the Phytophthora genus poses a significant threat to soybean productivity. While resistance mechanisms against Phytophthora sojae have been extensively studied, the molecular basis underlying immune responses to the newly recognized pathogen, Phytophthora sansomeana, remains largely unknown. In this study, we investigated transcriptomic and epigenetic responses of two resistant (Colfax and NE2701) and two susceptible (Williams 82 and Senaki) soybean lines at four time points (2, 4, 8, and 16 hours post inoculation, hpi) after P. sansomeana inoculation. Through comparative transcriptomic analyses, we identified a greater number of differentially expressed genes (DEGs) upon pathogen inoculation in the resistant lines compared to the susceptible lines, predominantly at 8 and 16 hpi. These DEGs were associated with multiple phytohormones, including ethylene, salicylic acid, and jasmonic acid, along with various transcription factors and signaling cascade proteins. Moreover, DE transposable elements (TEs) were predominantly up-regulated after inoculation, and we found that TEs differentially transcribed in a resistant line were enriched near genes. Notably, we identified a long non-coding RNA (lncRNA) that was significantly differentially transcribed after inoculation exclusively in the resistant lines, potentially regulating two flanking LURP-one-related genes, known as key defense mediators in Arabidopsis against oomycete pathogens. Furthermore, DNA methylation analysis revealed increased CHH (H = A, T, or C) methylation levels in lncRNAs after inoculation, with delayed responses in the resistant line compared to the susceptible line. Overall, our results provide insights into the molecular mechanisms underlying resistance to P. sansomeana in soybean and underscore the potential role of lncRNAs and epigenetic regulation in plant defense responses.

2023-11-24 | GSE240965 | GEO

Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean [RNA-seq]

2023-11-24 | GSE240964 | GEO

Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean

Project description:Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean

| PRJNA1005984 | ENA

Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean [WGBS]

Project description:Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean [WGBS]

| PRJNA1005991 | ENA

Phytophthora sansomeana

Project description:Phytophthora sansomeana overview

| PRJNA1058056 | ENA

Transcriptomic and epigenetic responses unveil resistance mechanisms to Phytophthora sansomeana in soybean

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-11-23 | GSE240966 | GEO

Phytophthora sansomeana strain:Psa-2310

Project description:Phytophthora sansomeana strain:Psa-2310 Genome sequencing and assembly

| PRJNA1057580 | ENA

Phytophthora sojae, race 2, infection of soybean hypocotyls

Project description:Examination of soybean hypocotyls, G. max cv. Harosoy (Rps7), at 3, 6, 12, 24 and 48 hours after inoculation with P. sojae, race 2, isolate P6497 Patterns of Gene Expression Upon Infection of Soybean Plants by Phytophthora sojae. P. Moy, D. Qutob, B. P. Chapman, I. Atkinson, and M. Gijzen. Pages 1051-1062. Publication no. M-2004-0728-01R. Molecular Plant-Microbe Interactions, October 2004, Volume 17, Number 10. Keywords: time-course

2004-09-14 | GSE1352 | GEO

Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Project description:To identify soybean genes and QTLs associated with quantitative resistance to infection by the oomycete pathogen Phytophthora sojae, we conducted a very large-scale microarray experiment using 2522 Affymetrix GeneChips. The experiment involved assaying a total of 298 soybean recombinant inbred lines together with internal checks.

2008-05-30 | GSE11611 | GEO

Host and pathogen gene expression during early infection of soybean seedlings by Phytophthora sojae, analyzed by ABI Solid RNA sequencing

Project description:Hypocotyls of soybean (Glycine max) seedlings of cultivar Williams were inoculated with mycelia of the oomycete pathogen Phytophthora sojae grown in liquid V8 medium or the hypocotyls were mock inoculated. After 12 hours, the sites of inoculation were excised from the hypocotyls and frozen for RNA extraction. Phytophthora sojae mycelia used for inoculation was saved for RNA extraction also

2021-08-28 | GSE182773 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data