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ABSTRACT: Arvicanthis niloticus (Nile rat) genome, mArvNil1, sequence data

PROVIDER: PRJNA1008597 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR25740300_subreads.fastq.gz	Fastqsanger.gz
	SRR25740301_subreads.fastq.gz	Fastqsanger.gz
	SRR25740302_subreads.fastq.gz	Fastqsanger.gz
	SRR25740303_subreads.fastq.gz	Fastqsanger.gz
	SRR25740304_subreads.fastq.gz	Fastqsanger.gz

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Project description:To quantify gene expression differences in olfactory epithelium between the mouse (Mus musculus) and the Nile rat (Arvicanthis niloticus), paired-end RNA sequencing (RNA-seq) was used to profile olfactory epithelium transcriptomes of six Nile rats and six mice (C57BL/6J) (one male and one female at the age of 8, 12, and 16 weeks for each species).

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Project description:Microarray analysis on livers of young (three weeks old) Nile rats (Arvicanthis niloticus) fed with either a high carbohydrate diet only (percentage energy from carbohydrate:fat:protein = 70:10:20, 16.7 kJ/g) or a high carbohydrate diet supplemented with palm fruit juice (PFJ) (415 ml of 13000 ppm gallic acid equivalent (GAE) for a final concentration of 5.4 g GAE per kg diet or 2.7 g per 2000 kcal) PFJ (415 ml of 13000 ppm gallic acid equivalent (GAE) for a final concentration of 5.4 g GAE per kg diet or 2.7 g per 2000 kcal) was supplemented to young Nile rats (Arvicanthis niloticus) given a high carbohydrate diet (percentage energy from carbohydrate:fat:protein = 70:10:20, 16.7 kJ/g) to observe for possible anti-diabetic effects. Livers were harvested four weeks after the feeding regimen for gene expression studies. Results from the microarray data analysis carried out show that rats given PFJ had down-regulated insulin signalling, consistent with anti-diabetic effects observed in vivo. Total RNA obtained from livers of young Nile rats (Arvicanthis niloticus) given PFJ in a high carbohydrate diet (four weeks after the feeding regimen) were compared to controls (three replicates in the treatment group versus four replicates in the control group)

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Project description:Whole genome sequencing of the Nile rat (Arvicanthis niloticus)

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