Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Argyrosomus japonicus

ABSTRACT: Illumina and Ion-Torrent Data generated by sequencing the genome of Argyrosomos japonicus

PROVIDER: PRJNA1018724 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26357808_1.fastq.gz	Fastqsanger.gz
	SRR26357808_2.fastq.gz	Fastqsanger.gz
	SRR26339522_1.fastq.gz	Fastqsanger.gz
	SRR26339522_2.fastq.gz	Fastqsanger.gz
	SRR26442571_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Argyrosomus japonicus

Project description:Argyrosomus japonicus Genome sequencing and assembly

| PRJNA669485 | ENA

Argyrosomus japonicus

Project description:Argyrosomus japonicus

| PRJNA611881 | ENA

Argyrosomus japonicus

Project description:Argyrosomus japonicus overview

| PRJNA158901 | ENA

Argyrosomus japonicus

Project description:Argyrosomus japonicus genome mining for microsatellite markers

| PRJNA195429 | ENA

Argyrosomus japonicus

Project description:Raw sequence reads of Argyrosomus japonicus transcriptome

| PRJNA838245 | ENA

Argyrosomus japonicus isolate:LY-2024

Project description:Argyrosomus japonicus isolate:LY-2024 Genome sequencing

| PRJNA1119992 | ENA

Apostichopus japonicus circumoral nerve ring LC-MS/MS

Project description:The objective of this study was to perform a detailed analysis of neuropeptides in A. japonicus by sequencing the transcriptome of neural tissue (circumoral nerve ring; CNR) and combining analysis of these sequence data with mass spectroscopic analysis of CNR extracts so that the structure of mature neuropeptides could be determined. Collectively, these data provide an important molecular basis for investigation of the physiological roles of neuropeptides in A. japonicus and other sea cucumber species.

2019-06-25 | PXD013818 | Pride

Methylome of Lotus japonicus accession 'Gifu'

Project description:Whole genome DNA methylation data for the the Lotus japonicus accession 'Gifu'

2016-12-01 | GSE73069 | GEO

Lotus japonicus

Project description:Illumina sequence of Lotus japonicus genome

| PRJNA841799 | ENA

Semiconductor-based sequencing of genome-wide DNA methylation states

Project description:Methylated DNA immunoprecipitation sequencing (MeDIP-Seq) is a widely used approach to study DNA methylation genome-wide. Here, we present a novel MeDIP-Seq protocol compatible with the Ion Torrent semiconductor-based sequencing platform that is scalable and accurately identifies sites of differential DNA methylation. Additionally, we demonstrate that the high-throughput data derived from MeDIP-Seq on the Ion Torrent platform provides adequate coverage of CpG cytosines, the methylation states of which we validated at single-base resolution on the Infinium HumanMethylation450K Beadchip array. We applied this integrative approach to further investigate the role of DNA methylation in alternative splicing and to profile 5-mC and 5-hmC variants of DNA methylation in normal human brain tissue that we observed localize over distinct genomic regions. These applications of MeDIP-Seq on the Ion Torrent platform have broad utility and add to the current methodologies for profiling genome-wide DNA methylation states in normal and disease conditions. MeDIP-Seq on Ion Torrent Platform in HCT116 and Human Brain

2015-06-10 | E-GEOD-61968 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data