Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Draft Genome Sequences of 21 Pedobacter strains isolated from amphibian specimens

PROVIDER: PRJNA1019955 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR26200139_1.fastq.gz	Fastqsanger.gz
	SRR26200139_2.fastq.gz	Fastqsanger.gz
	SRR26200140_1.fastq.gz	Fastqsanger.gz
	SRR26200140_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 43

Similar Datasets

Project description:Draft Genome Sequences of Weissella Strains Isolated from Diverse Environments

| PRJNA1176182 | ENA

Escherichia albertii strain:YS-F1-1a, YS-F1-2, YS-F5-1a, YS-F12-1, YS-F13-1a, YS-F14-1c

Project description:Draft genome sequences of Escherichia albertii strains isolated from pig

| PRJDB8108 | ENA

Project description:Draft genome sequences of strains isolated from Amazonian Dark Earth

| PRJNA988090 | ENA

Neisseria meningitidis

Project description:Draft genome sequences of Neisseria meningitidis strains isolated in Japan

| PRJDB11955 | ENA

Endogenized hypervirulence-associated DNA virus BdDV-1 is primarily restricted to enzootic lineages of the amphibian pathogen Batrachochytrium dendrobatidis

Project description:The Global Panzootic Lineage (GPL) of the pathogenic fungus Batrachochytrium dendrobatidis (Bd) has caused severe amphibian population declines, yet the drivers underlying the high frequency of GPL in regions of amphibian decline are unclear. Using publicly available Bd genome sequences, we identified multiple non-GPL Bd isolates that contain a circular Rep-encoding single stranded DNA-like virus which we named BdDV-1. We further sequenced and constructed genome assemblies with long read sequences to find that the virus is integrated into the nuclear genome in some strains. Attempts to cure virus positive isolates were unsuccessful, however, phenotypic differences between naturally virus positive and virus negative Bd isolates suggested that BdDV-1 decreases the growth of its host in vitro but increases the virulence of its host in vivo. BdDV-1 is the first described CRESS DNA mycovirus associated with hypervirulence with a distribution inversely associated with the emergence of the panzootic lineage.

2023-11-05 | GSE246809 | GEO

Comparative proteomics of Helicobacter pylori strains reveals geographical features rather than genomic variations

Project description:Helicobacter pylori, which is known as pathogens of various gastric diseases, have many types of genome sequence variants. That is part of the reason why pathogenesis and infection mechanisms of the H. pylori-driven gastric diseases have not been well clarified yet. Here we performed a large-scale proteome analysis to profile the heterogeneity of the proteome expression of 7 H. pylori strains by using LC/MS/MS-based proteomics approach combined with a customized database consisting of non-redundant tryptic peptide sequences derived from full genome sequences of 52 H. pylori strains. The non-redundant peptide database enabled us to identify more peptides in the database search of MS/MS data, compared with a simply merged protein database. Using the approach we performed proteome analysis of genome-unknown strains of H. pylori in as large-scale as genome-known ones. Clustering of the H. pylori strains using the proteome profiling slightly differed from the genome profiling and more clearly divided the strains into two groups based on the isolated area. Furthermore, we also identified phosphorylated proteins and sites of the H. pylori strains and obtained phosphorylation motif located in the N-terminus, which are commonly observed in bacteria.

2018-12-28 | PXD011364 | JPOST Repository

Project description:Draft genome sequences of Actinobacteria strains isolated from oil polluted soil

| PRJNA298288 | ENA

Project description:Draft Genome Sequences of Hazelnut-Associated Pseudomonas strains Isolated from Ontario, Canada

| PRJNA659801 | ENA

Project description:Draft genome sequences of Bacillus strains isolated from the rhizosphere of maize

| PRJNA507554 | ENA

Neisseria meningitidis

Project description:Draft genome sequences of Neisseria meningitidis strains isolated in Japan in 2017

| PRJDB11354 | ENA