Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Aetiology of bovine digital dermatitis in Australia

PROVIDER: PRJNA1021941 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26202800_1.fastq.gz	Fastqsanger.gz
	SRR26202800_2.fastq.gz	Fastqsanger.gz
	SRR26202801_1.fastq.gz	Fastqsanger.gz
	SRR26202801_2.fastq.gz	Fastqsanger.gz
	SRR26202802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 254

Similar Datasets

Identifying host pathogenic pathways in bovine digital dermatitis by RNA-Seq analysis of lesions

Project description:Digital dermatitis is a painful foot disease compromising welfare in dairy cattle. The disease has a complex multibacterial aetiology, but little is known about its pathogenesis. In this study, gene expression in skin biopsies from five bovine digital dermatitis lesions and five healthy bovine feet was compared using RNA-Seq technology. Differential gene expression was determined after mapping transcripts to the Btau 4.0 genome. Pathway analysis identified gene networks involving differentially expressed transcripts. Bovine digital dermatitis lesions had increased expression of mRNA for a2-macroglobulin-like 1, a protein potentially involved in bacterial immune evasion and bacterial survival. There was increased expression of keratin 6A and interleukin 1b mRNA in bovine digital dermatitis lesions, but reduced expression of most other keratin and keratin-associated genes. There was little evidence of local immune reactions to the bacterial infection present in lesions. Ten samples were processed; five normal skin biopsies from the hind foot skin and five digital dermatitis lesions (large (>2cm) red raw in appearance).

2013-03-26 | E-GEOD-41732 | biostudies-arrayexpress

Identifying host pathogenic pathways in bovine digital dermatitis by RNA-Seq analysis of lesions

2013-03-26 | GSE41732 | GEO

Treponema

Project description:Bovine digital dermatitis in Victoria, Australia

| PRJNA429866 | ENA

Bovine metagenome digital dermatitis

Project description:Bovine metagenome digital dermatitis Metagenome

| PRJNA478809 | ENA

Targeting the treponemal microbiome of digital dermatitis infections by deep coverage pyrosequencing

Project description:We examined 36 biopsies taken from digital dermatitis lesions of Holstein cows. The target was the V3 -V4 variable region of 16S rRNA using Treponema specific primers. We identified 20 different taxa of Treponema using this approach. Phylogenetic study of the Treponema taxa found in digital dermatitis lesions of Holstein cows.

2013-06-25 | E-GEOD-42426 | biostudies-arrayexpress

Project description:Microbiota from Bovine digital dermatitis lesions targeted loci

| PRJNA300499 | ENA

bovine metagenome

Project description:Bovine digital dermatitis associated treponemes in the dairy herd environment

| PRJNA240271 | ENA

Project description:Treponema phagedenis strains from bovine digital dermatitis from Alberta Canada

| PRJNA1065570 | ENA

Digital Dermatitis multimicrobial community

Project description:Multimicrobial community from lesion derived from bovine digital dermatitis Raw sequence reads

| PRJNA317033 | ENA

bovine metagenome