Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Eleutherodactylus coqui tail response to thyroid hormones

PROVIDER: PRJNA1022815 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26244653_1.fastq.gz	Fastqsanger.gz
	SRR26244653_2.fastq.gz	Fastqsanger.gz
	SRR26244654_1.fastq.gz	Fastqsanger.gz
	SRR26244654_2.fastq.gz	Fastqsanger.gz
	SRR26244655.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Eleutherodactylus coqui

Project description:Eleutherodactylus coqui overview

| PRJNA1058054 | ENA

Project description:Eleutherodactylus coqui (Common coqui) genome, aEleCoq1

| PRJNA1061194 | ENA

Eleutherodactylus coqui strain:aEleCoq1

Project description:Eleutherodactylus coqui (Common coqui) genome, aEleCoq1, haplotype 2

| PRJNA1057918 | ENA

Eleutherodactylus coqui strain:aEleCoq1

Project description:Eleutherodactylus coqui (Common coqui) genome, aEleCoq1, haplotype 1

| PRJNA1057919 | ENA

Project description:Eleutherodactylus coqui (Common coqui) genome, aEleCoq1, sequence data

| PRJNA1151971 | ENA

Eleutherodactylus coqui

Project description:Eleutherodactylus coqui Genome sequencing and assembly

| PRJNA578591 | ENA

Project description:Genotyping by Sequencing for Eleutherodactylus coqui

| PRJNA833081 | ENA

Project description:Illumina sequencing of total skin samples of Eleutherodactylus coqui and Eleutherodactylus johnstonei

| PRJNA953648 | ENA

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

Project description:Frogs are an ecologically diverse and phylogenetically ancient group of anuran amphibians that include important vertebrate cell and developmental model systems, notably the genus Xenopus. Here we report a high-quality reference genome sequence for the western clawed frog, Xenopus tropicalis, along with draft chromosome-scale sequences of three distantly related emerging model frog species, Eleutherodactylus coqui, Engystomops pustulosus and Hymenochirus boettgeri. Frog chromosomes have remained remarkably stable since the Mesozoic Era, with limited Robertsonian (i.e., centric) translocations and end-to-end fusions found among the smaller chromosomes. Conservation of synteny includes conservation of centromere locations, marked by centromeric tandem repeats associated with Cenp-a binding, surrounded by pericentromeric LINE/L1 elements. We explored chromosome structure across frogs, using a dense meiotic linkage map for X. tropicalis and chromatin conformation capture (Hi-C) data for all species. Abundant satellite repeats occupy the unusually long (~20 megabase) terminal regions of each chromosome that coincide with high rates of recombination. Both embryonic and differentiated cells show reproducible association of centromeric chromatin, and of telomeres, reflecting a Rabl-like configuration. Our comparative analyses reveal 13 conserved ancestral anuran chromosomes from which contemporary frog genomes were constructed.

2022-03-30 | GSE199671 | GEO

Single-cell RNA sequencing of zebrafish thyroid cells

Project description:The thyroid gland is responsible for supplying the thyroid hormones to the body. The gland is an endocrine organ with an intricate structure enabling production, storage and release of the thyroid hormones. The gland is composed of numerous spherical follicles of varying sizes, surrounded by thyroid follicular epithelial cells, or thyrocytes. The thyrocytes surrounding the follicles generate the thyroid hormones in a multi-step process. Though the machinery responsible for the production of thyroid hormones by thyrocytes is well established, it remains unknown if all the thyrocytes resident in the thyroid gland are equally capable of generating thyroid hormones. In other words, the extent of molecular homogeneity between individual thyrocytes has not yet been investigated. To obtain an unbiased picture into the molecular heterogeneity present in zebrafish thyrocytes, we performed droplet based next-generation sequencing of individual thyrod gland cells. Using unsupervised clustering, we could identify all the major cell types present in the thyroid gland. Moreover, we could define sub-populations within the major cell-types, demonstrating the presence of molecular heterogeneity within nominally homogenous cell-populations.

2019-12-31 | GSE133466 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data