Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome-assisted gene prediction for Thrips tabaci Genome sequencing

PROVIDER: PRJNA1028763 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26402516_1.fastq.gz	Fastqsanger.gz
	SRR26402516_2.fastq.gz	Fastqsanger.gz
	SRR26402517_1.fastq.gz	Fastqsanger.gz
	SRR26402517_2.fastq.gz	Fastqsanger.gz
	SRR26402518_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Thrips tabaci Genome sequencing

| PRJNA1028647 | ENA

Project description:Thrips tabaci genome

| PRJNA877643 | ENA

Thrips tabaci

Project description:Thrips tabaci Transcriptome or Gene expression

| PRJNA259595 | ENA

Thrips tabaci

Project description:Thrips tabaci Transcriptome or Gene expression

| PRJNA205568 | ENA

Thrips tabaci

Project description:Thrips tabaci (onion thrips) genome assembly

| PRJDB16625 | ENA

Thrips tabaci

Project description:Thrips tabaci overview

| PRJNA266025 | ENA

Metabolomic and transcriptomic analyses identify quinic acid protecting eggplant from damage caused by western flower thrips

Project description:BACKGROUND: Western flower thrips are considered the major insect pest of horticultural crops worldwide, causing economic and yield loss to Solanaceae crops. The eggplant (Solanum melongena L.) resistance against thrips remains largely unexplored. This work aims to identify thrips-resistant eggplants and dissect the molecular mechanisms underlying this resistance using the integrated metabolomic and transcriptomic analyses of thrips-resistant and -susceptible cultivars. RESULTS: We developed a micro-cage thrips bioassay to identify thrips-resistant eggplant cultivars, and highly resistant cultivars were identified from wild eggplant relatives. Metabolomic profiles of thrips-resistant and -susceptible eggplant were compared using the gas chromatography-mass spectrometry (GC-MS)-based approach, resulting in the identification of a higher amount of quinic acid in thrips-resistant eggplant compared to the thrips-susceptible plant. RNA-sequencing analysis identified differentially expressed genes (DEGs) by comparing genome-wide gene expression changes between thrips-resistant and -susceptible eggplants. Consistent with metabolomic analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of DEGs revealed that the starch and sucrose metabolic pathway in which quinic acid is a metabolic by-product was highly enriched. External application of quinic acid enhances the resistance of susceptible eggplant to thrips. CONCLUSION: Our results showed that quinic acid plays a key role in the resistance to thrips. These findings highlight a potential application of quinic acid as a biocontrol agent to manage thrips and expand our knowledge to breed thrips-resistant eggplant.

2023-08-01 | GSE210166 | GEO

Thrips tabaci strain:Punjab-India population

Project description:Thrips tabaci strain:Punjab-India population Transcriptome or Gene expression

| PRJNA392363 | ENA

Thrips tabaci

Project description:Thrips tabaci Raw sequence reads

| PRJNA350618 | ENA

Thrips tabaci

Project description:Thrips tabaci Raw sequence reads

| PRJNA473389 | ENA