Soil metagenome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA1029104 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR26457894_1.fastq.gz | Fastqsanger.gz | |||
| SRR26457894_2.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 2 of 2 |
Similar Datasets
Project description:Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-O-20210622-comp-1 metagenome
| PRJNA1029139 | ENA
Project description:Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-M-20210623-comp-1 metagenome
| PRJNA1029105 | ENA
Project description:Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-O-20210622-comp-1 metagenome
| PRJNA1029137 | ENA
Project description:Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-M-20210622-comp-1 metagenome
| PRJNA1029138 | ENA
Project description:Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-M-20210622-comp-1 metagenome
| PRJNA1029140 | ENA
Project description:Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-O-20210621-comp-1 metagenome
| PRJNA1029141 | ENA
Project description:This study began with 72 male 4-week-old BALB/c mice. The mice were split evenly into one of four cohorts: Control, River, Pine, and Road. The control mice were raised with standard corn cob bedding whereas the remaining mice were raised with clean bedding amended with 300 mL of one of three different types of soil. The soil exposure continued throughout the experiment, with 300 mL of new soil added with bi-weekly cage changes. The soils used to amend the cage bedding were previously characterized as having high (Pine), medium (River), and low (Road) diversity. The River and Pine soil were collected from Duke Forest and the Road soil was collected adjacent to Highway 15-501 in Chapel Hill, North Carolina. All mice were given a standard diet and the cages were distributed reverse osmosis treated water through a centralized Lixit® system that was fed to each cage in parallel. After 32 days of standard rearing with amended soils, the mice were exposed via oropharyngeal aspiration to either live influenza A (PR8) virus or heat inactivated (HI) virus.
2022-10-17 | GSE215292 | GEO
Project description:Soil microbial community is a complex blackbox that requires a multi-conceptual approach (Hultman et al., 2015; Bastida et al., 2016). Most methods focus on evaluating total microbial community and fail to determine its active fraction (Blagodatskaya & Kuzyakov 2013). This issue has ecological consequences since the behavior of the active community is more important (or even essential) and can be different to that of the total community. The sensitivity of the active microbial community can be considered as a biological mechanism that regulates the functional responses of soil against direct (i.e. forest management) and indirect (i.e. climate change) human-induced alterations. Indeed, it has been highglihted that the diversity of the active community (analyzed by metaproteomics) is more connected to soil functionality than the that of the total community (analyzed by 16S rRNA gene and ITS sequencing) (Bastida et al., 2016). Recently, the increasing application of soil metaproteomics is providing unprecedented, in-depth characterisation of the composition and functionality of active microbial communities and overall, allowing deeper insights into terrestrial microbial ecology (Chourey et al., 2012; Bastida et al., 2015, 2016; Keiblinger et al., 2016). Here, we predict the responsiveness of the soil microbial community to forest management in a climate change scenario. Particularly, we aim: i) to evaluate the impacts of 6-years of induced drought on the diversity, biomass and activity of the microbial community in a semiarid forest ecocosystem; and ii) to discriminate if forest management (thinning) influences the resistance of the microbial community against induced drought. Furthermore, we aim to ascertain if the functional diversity of each phylum is a trait that can be used to predict changes in microbial abundance and ecosystem functioning.
2021-02-02 | PXD005447 | Pride
Project description:Anthropogenic nitrogen (N) deposition may affect soil organic carbon (SOC) decomposition, thus affecting the global terrestrial carbon (C) cycle. However, it remains unclear how the level of N deposition affects SOC decomposition by regulating microbial community composition and function, especially C-cycling functional genes structure. We investigated the effects of short-term N addition on soil microbial C-cycling functional gene composition, SOC-degrading enzyme activities, and CO2 emission in a 5-year field experiment established in an artificial Pinus tabulaeformis forest on the Loess Plateau, China.
2022-03-01 | GSE147041 | GEO
Project description:Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_047-M-20210809-comp-1 metagenome
| PRJNA1029125 | ENA