Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Repetitive element proliferation in Amomum (Zingiberaceae)

PROVIDER: PRJNA1029323 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26415115_1.fastq.gz	Fastqsanger.gz
	SRR26415115_2.fastq.gz	Fastqsanger.gz
	SRR26415116_1.fastq.gz	Fastqsanger.gz
	SRR26415116_2.fastq.gz	Fastqsanger.gz
	SRR26415117_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

Effects of aging and exercise on peripheral blood mononuclear cell gene expression

Project description:Aging is associated with altered gene expression and dysregulation of non-coding RNAs, including repetitive element transcripts. The purpose of this study was to characterize age- and exercise-related differences in gene and repetitive element expression in humans using RNA-seq.

2021-05-05 | GSE153100 | GEO

ChIP-Seq of FBXO44 and H3K9me3 in MDA-MB-231

Project description:FBXO44 bound H3K9me3-modified nucleosomes at the replication fork and recruited the H3K9me3 methyltransferase SUV39H1 for repetitive element silencing post-DNA replication

2021-03-26 | GSE139973 | GEO

Project description:Next-generation sequencing data for the phylogenomics and genome size evolution of the genus Amomum s.s. (Zingiberaceae)

| PRJNA668878 | ENA

Repetitive element transcript accumulation is related to inflammaging in humans

Project description:Repetitive element transcript accumulation is related to inflammaging in humans

| PRJNA1095453 | ENA

Mouse ooplasm confers context-specific reprogramming capacity

Project description:Enucleated oocytes have the remarkable ability to reprogram somatic nuclei back to totipotency. Here we investigate genome-scale DNA methylation patterns after nuclear transfer and identify specific targets for DNA demethylation as well as NT specific limitations. We find that the ooplasm can confer similar demethylation patterns in both processes except at some repetitive element classes and that germ-line associated promoters are specifically targeted in NT. Comparison of DNA methylation patterns in murine fertilization and somatic cell nuclear transfer

2012-08-10 | E-GEOD-38711 | biostudies-arrayexpress

EZH2 inhibition with GSK343 reduces H3K27me3 deposition at various repetitive elements in splenic B cells [ChIP-Seq]

Project description:EZH2 is a histone methyltransferase that deposits the repressive histone H3 lysine 27 trimethylation (H3K27me3). This mark has been reported to silence expression of various repetitive elements in the genome. We sought to identify the effect of EZH2 inhibition on H3K27me3 peaks and their overlap with repetitive elements in splenic B cells. We generated a novel mutant mouse line whose ability to detect induced repeat element expression has been abrogated. We report that EZH2 inhibition decreases the number of H3K27me3 peaks in both WT and mutants compared to control.

2023-10-18 | GSE198158 | GEO

Differential chromatin accessibility landscape reveals the structural and functional features of the allopolyploid wheat chromosomes

Project description:We have a limited understanding of how the complexity of the wheat genome influences the distribution of chromatin states along the homoeologous chromosomes. Using a differential nuclease sensitivity (DNS) assay, we investigated the chromatin states in the coding and transposon element (TE) -rich repetitive regions of the allopolyploid wheat genome.

2020-06-26 | GSE153289 | GEO

Project description:TRANSCRIPTOMICS ANALYSIS OF SECONDARY METABOLITES BIOSYNTHESIS PATHWAYS AND PHYLOGENOMICS STUDY OF SELECTED AMOMUM ROXB. (ZINGIBERACEAE) WILD GINGER SPECIES FROM PENINSULAR MALAYSIA

| PRJNA936673 | ENA

Wurfbainia villosa

Project description:Amomum villosum overview

| PRJNA416954 | ENA

Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression

Project description:Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression

| PRJNA809026 | ENA