Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Syringa oblata heartwood

PROVIDER: PRJNA1029658 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26425440_1.fastq.gz	Fastqsanger.gz
	SRR26425440_2.fastq.gz	Fastqsanger.gz
	SRR26425441_1.fastq.gz	Fastqsanger.gz
	SRR26425441_2.fastq.gz	Fastqsanger.gz
	SRR26425442_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Syringa oblata

Project description:Syringa oblata overview

| PRJNA476383 | ENA

Transcriptomic Analysis Reveals Flavonoid Biosynthesis of Syringa oblata Lindl. in Response to Different Light Intensity

Project description:Background: Hazy weather significantly increase air pollution and affect light intensity which may also affect medicinal plants growth. Syringa oblata Lindl. (S. oblata), an effective anti-biofilm medicinal plants, is also vulnerable to changes in plant photoperiods and other abiotic stress responses. Rutin, one of the flavonoids, is the main bioactive ingredient in S. oblata that inhibits Streptococcus suis biofilm formation. Thus, the present study aims to explore the biosynthesis and molecular basis of flavonoids in S. oblata in response to different light intensity. Results: In this study, it was shown that compared with natural (Z0) and 25% ~ 35% (Z2) light intensities, the rutin content of S. oblata under 50% ~ 60% (Z1) light intensity increased significantly. In addition, an integrated analysis of metabolome and transcriptome was performed using light intensity stress from two kinds of light intensities which S. oblata was subjected to: Z0 and Z1. The results revealed that differential metabolites and genes were mainly related to the flavonoid biosynthetic pathway. We found out that 13 putative structural genes and a transcription factor bHLH were significantly up-regulated in Z1. Among them, integration analysis showed that 3 putative structural genes including 4CL1, CYP73A and CYP75B1 significantly up-regulated the rutin biosynthesis, suggesting that these putative genes may be involved in regulating the flavonoid biosynthetic pathway, thereby making them key target genes in the whole metabolic process. Conclusions: The present study provided helpful information to search for the novel putative genes that are potential targets for S. oblata in response to light intensity.

2019-11-25 | GSE137862 | GEO

Syringa oblata

Project description:Syringa oblata Raw sequence reads

| PRJNA295249 | ENA

Syringa oblata

Project description:Syringa oblata Genome sequencing and assembly

| PRJNA776991 | ENA

Syringa oblata

Project description:Syringa oblata Transcriptome or Gene expression

| PRJNA476225 | ENA

Syringa oblata

Project description:Syringa oblata Genome sequencing and assembly

| PRJNA766301 | ENA

Syringa oblata

Project description:Syringa oblata Genome sequencing and assembly

| PRJNA816987 | ENA

Syringa oblata var. alba

Project description:Syringa oblata var. alba Genome sequencing and assembly

| PRJNA854692 | ENA

Extraction and high-throughput sequencing of oak heartwood DNA: assessing the feasibility of genome-wide DNA methylation profiling

Project description:Tree ring features are affected by environmental factors and therefore are the basis for dendrochronological studies to reconstruct past environmental conditions. Oak wood often provides the data for these studies because of the durability particularly of oak heartwood and, hence the availability of samples spanning long time periods of the distant past. Wood formation is regulated in part by epigenetic mechanisms such as DNA methylation. Studies in the methylation state of DNA preserved in oak heartwood thus could identify epigenetic tree ring features informing on past environmental conditions. We investigated the feasibility of such studies using heartwood samples core-drilled from the trunks of standing oak trees spanning the AD 1776-2014. Heartwood contains little DNA, and large amounts of phenolic compounds known to hinder the preparation of high-throughput sequencing libraries. We sequenced whole-genome and DNA methylome libraries for oak heartwood up to 100 and 50 years of age, respectively. However, only 56 genomic regions with sufficient coverage for quantitative methylation analysis were identified, suggesting that the high-throughput sequencing of DNA will be in principal feasible for wood formed <100 years ago is impeded by the reduction in library complexity caused by the bisulfite treatment used to generate the oak methylome.

2020-01-07 | GSE143201 | GEO

Transcriptomic Analysis Reveals Flavonoid Biosynthesis of Syringa oblata Lindl. in Response to Different Light Intensity

Project description:Transcriptomic Analysis Reveals Flavonoid Biosynthesis of Syringa oblata Lindl. in Response to Different Light Intensity

| PRJNA573685 | ENA