Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Carrier Subclass

ABSTRACT: Carrier Subclass

PROVIDER: PRJNA1031099 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26472200.fastq.gz	Fastqsanger.gz
	SRR26472300.fastq.gz	Fastqsanger.gz
	SRR26472400.fastq.gz	Fastqsanger.gz
	SRR26472500.fastq.gz	Fastqsanger.gz
	SRR26472600.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 556

Similar Datasets

Carrier Subclass Year 4

Project description:Carrier Subclass Year 4

| PRJNA1182352 | ENA

Carrier Subclass

Project description:To evaluate performance of immunomagnetic separation, differential ultracentrifugation and size exculsion chromatography in the isolation of different extracellular RNA carriers from biofluids.

2024-10-31 | GSE246010 | GEO

Carrier Subclass Year 4

Project description:To evaluate performance of immunomagnetic separation and size exclusion chromatography in the isolation of different extracellular RNA carriers from biofluids.

2024-12-16 | GSE281131 | GEO

Bio-carrier metagenome

Project description:Bio-carrier metagenome Metagenome

| PRJNA448658 | ENA

Subclass I SnRK2-interacting protein, LC-MS/MS

Project description:To reveal subclass I SnRK2-interacting proteins, we conducted co-immunoprecipitation using anti-GFP antibody from subclass I SnRK2-GFP expressing plants. Immunoprecipitates were identified by LC-MS/MS analyses.

2020-04-27 | PXD017371 | Pride

Comprehensive proteomic characterization reveals subclass-specific molecular aberrations within triple-negative breast cancer

Project description:Triple-negative breast cancer (TNBC) is regarded as the most aggressive subtype of breast cancer lacking targeted therapies. This is attributed to its high heterogeneity that complicates elucidation of its molecular aberrations. Here, we report identification of specific proteome expression profiles pertaining to two TNBC subclasses, basal A and basal B, through in-depth proteomics analysis of breast cancer cells. We observed that kinases and proteases displayed unique expression patterns within the subclasses, similar to whole proteome clusters. Systematic analyses of protein-protein interaction and co-regulation networks of these kinases and proteases unraveled dysregulated pathways and plausible targets for each TNBC subclass. Among these, we identified kinases AXL, PEAK1 and TGFBR2, and proteases FAP, UCHL1 and MMP2/14, as specific targets for basal B subclass, which represents the more aggressive TNBC cell lines. Our study thus highlights intricate mechanisms and distinct targets within TNBC, and emphasizes that these have to be exploited in a subclass-specific manner rather than a one-for-all TNBC therapy.

2020-03-03 | PXD017025 | Pride

Nanopore adaptive sampling with carrier DNA

Project description:Nanopore adaptive sampling with carrier DNA

| PRJEB59467 | ENA

Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

Project description:Viral genetictools that target specificbraincell types could transform basicneuroscienceand targeted gene therapy. Here, we use comparative open chromatin analysis to identify thousands of human-neocortical-subclass-specific putative enhancers from across the genome tocontrol gene expressionin adeno-associated virus (AAV) vectors. The cellular specificity of reporter expression from enhancer-AAVs is established by molecular profiling after systemic AAV delivery in mouse. Over 30% of enhancer-AAVs produce specific expression in the targeted subclass, including both excitatory and inhibitory subclasses. We present a collection ofParvalbumin(PVALB) enhancer-AAVs that show highly enriched expression not only in cortical PVALB cells but also in some subcortical PVALB populations. Five vectors maintain PVALB-enriched expression in primateneocortex. These results demonstrate how genome-wide open chromatin data mining and cross-species AAV validation can be used to create the next generation of non-species-restricted viral genetic tools.

2023-06-27 | GSE235997 | GEO

LIN28B underlies the pathogenesis of a subclass of Ewing sarcoma

Project description:LIN28B underlies the pathogenesis of a subclass of Ewing sarcoma

| PRJNA566347 | ENA

RNA sequencing of Streptococcus equi subsp. equi collected from carrier and acute cases

Project description:Streptococcus equi subsp. equi (SEE) is a host-restricted bacterium that causes the common infectious upper respiratory disease known as strangles in horses. Perpetuation of SEE infection appears attributable to inapparent carrier horses because it does not persist long-term in the environment, infect other host mammals or vectors, and result in short-lived immunity. Whether pathogen factors enable SEE to remain in horses without causing clinical signs remains poorly understood. Thus, our objective was to use next-generation sequencing technologies to characterize the transcriptome of isolates of SEE from horses with acute clinical strangles and inapparent carrier horses to assess pathogen-associated changes that might reflect adaptions of SEE to the host contributing to inapparent carriage. RNA sequencing of SEE isolates from Pennsylvania demonstrated no genes that were differentially expressed between acute clinical and inapparent carrier isolates of SEE.

2021-05-28 | GSE167862 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data