Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: low-coverage Whole Genome Sequencing of Salvelinus alpinus

PROVIDER: PRJNA1031558 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26511600_1.fastq.gz	Fastqsanger.gz
	SRR26511600_2.fastq.gz	Fastqsanger.gz
	SRR26511700_1.fastq.gz	Fastqsanger.gz
	SRR26511700_2.fastq.gz	Fastqsanger.gz
	SRR26511800_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1035

Similar Datasets

Project description:low-coverage Whole Genome Sequencing data of Arctic char (Salvelinus alpinus)

| PRJNA1088115 | ENA

Salvelinus alpinus

Project description:Salvelinus alpinus overview

| PRJNA79347 | ENA

Chromosomal microarray analysis for validation of the WGS-based CNV detection results in recurrent miscarriage couples

Project description:In order to validate of CNV detection from low-coverage whole-genome sequencing in the blood samples from recurrent miscarriage couples, we employed a customized array Comparative Genomics Hybridization (aCGH, Agilent) approach as chromosomal microarray analysis (CMA) in present study for a cohort of 78 DNA samples from blood. CMA results were compared with low-coverage whole-genome sequencing detection results. 100% consistency was obtained in pathogenic or likely pathogenic CNVs detection.

2017-11-01 | GSE83941 | GEO

Generation and characterization of the Arctic charr multi-organ transcriptome

Project description:We report here the release of a multi organ transcriptome developped for the Arctic char Salvelinus alpinus. This reference set was obtained using the 454 GS FLX+ technology. A pool of one-year-old, immature offspring of wild, anadromous Arctic charr originating from Lake Varflusjoen, Svalbard (79oN), including both lean and fat individuals, and three-years-old mature offspring of charr originating from Lake Vårflusjøen, North-Norway (70oN) was sampled. In order to maximize the diversity of expressed transcripts, we sampled a variety of organs and tissues; the whole brain, gill and head kidney and pieces of the liver, gonad, abdominal fat and muscle.

2016-08-18 | E-MTAB-3522 | biostudies-arrayexpress

RNA-Seq of liver tissue samples from northern pike (Esox lucius), coho salmon (Oncorhynchus kisutch) and Arctic charr (Salvelinus alpinus)

Project description:The aim of this sequencing experiment was to make available liver tissue expression for selected fish species, northern pike (Esox lucius, Eluc), coho salmon (Oncorhynchus kisutch, Okis) and Arctic charr (Salvelinus alpinus, Salp), for comparative expression studies between the species. Samples in replicate of four were sacrificed according to protocols at each of the facilities from where samples were obtained. RNA was extracted from samples and Illumina TruSeq Stranded mRNA libraries were built. Sequencing was performed in two passes on an Illumina HiSeq2500, paired-end 125bp reads. Processed count tables per species as raw counts, FPKM, or TPM, were generated from read alignment to the NCBI genomes of the respective species using STAR and gene level counting using RSEM and NCBI gene annotation.

2020-04-30 | E-MTAB-8962 | biostudies-arrayexpress

Salvelinus alpinus alpinus

Project description:Salvelinus alpinus alpinus Transcriptome or Gene expression

| PRJNA391695 | ENA

Identification of driver genes in uterine leiomyosarcoma: low-coverage WGS

Project description:Low coverage whole-genome sequencing have been performed on uterine leiomyosarcoma to uncovered novel potential driver genes and recurrently affected pathways.

2018-07-02 | E-MTAB-5763 | biostudies-arrayexpress

Mapping meiotic crossovers in Arabidopsis using low-coverage whole-genome sequencing

Project description:Whole-genome DNA libraries were prepared from a population of just under 100 Col/Ler F1 backcrossed to Col. Low-coverage whole-genome sequencing was used to map meiotic crossovers in this population following the protocol described in Rowan et al., 2015, doi: 10.1534/g3.114.016501.

2015-10-15 | E-MTAB-3926 | biostudies-arrayexpress

Acute deletion of TET enzymes results in aneuploidy in mouse embryonic stem cells through decreased expression of Khdc3 (Whole Genome Sequencing [Low Coverage])

Project description:Low coverage whole genome sequencing (lc-WGS) from inducible Tet TKO (Tet iTKO) and control (Ctrl) mouse ESCs (mESC), as well as for germline Dnmt TKO mESCs. mESCs were sorted to isolate the Live/Dead dye and Thy1.2 negative CD326+GFP+ population representing the mESCs populations responsive to the tamoxifen treatment. The cells were resuspended in FACS buffer and filtered with a 70 µM filter before sorting. These bulk-population samples were analyzed by using low coverage Whole Genome Sequencing (lc-WGS).

2022-10-01 | GSE214402 | GEO

Salvelinus alpinus

Project description:Salvelinus alpinus Raw sequence reads

| PRJNA686381 | ENA