Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sericopelma melanotarsum

ABSTRACT: Sericopelma melanotarsum 16S rRNA amplicon excreta metagenome Raw sequence reads

PROVIDER: PRJNA1034664 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26662535_1.fastq.gz	Fastqsanger.gz
	SRR26662535_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

LC-MS/MS of autotrophic culture KS, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)

Project description:Nitrate-reducing iron(II)-oxidizing bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture KS. Raw sequencing data of 16S rRNA amplicon sequencing, shotgun metagenomics (short reads: Illumina; long reads: Oxford Nanopore Technologies), metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682552. This dataset contains proteomics data for 2 conditions (heterotrophic and autotrophic growth conditions) in triplicates.

2021-05-17 | PXD023186 | Pride

Megaphobema perterklaasi

Project description:Megaphobema perterklaasi 16S rRNA amplicon excreta metagenome Raw sequence reads

| PRJNA1034659 | ENA

Sericopelma sp.

Project description:Sericopelma sp. 16S rRNA amplicon excreta metagenome Raw sequence reads

| PRJNA1034660 | ENA

Aphonopelma seemanni

Project description:Aphonopelma seemanni 16S rRNA amplicon excreta metagenome Raw sequence reads

| PRJNA1034657 | ENA

Sphaerobothria hoffmanni

Project description:Sphaerobothria hoffmanni 16S rRNA amplicon excreta metagenome Raw sequence reads

| PRJNA1034663 | ENA

Sericopelma upala

Project description:Sericopelma upala 16S rRNA amplicon excreta metagenome Raw sequence reads

| PRJNA1034668 | ENA

Stichoplastoris elusinus

Project description:Stichoplastoris elusinus 16S rRNA amplicon excreta metagenome Raw sequence reads

| PRJNA1034662 | ENA

Tliltocatl albopilosus

Project description:Tliltocatl albopilosus 16S rRNA amplicon excreta metagenome Raw sequence reads

| PRJNA1034669 | ENA

LC-MS/MS of autotrophic culture BP, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)

Project description:Nitrate-reducing iron(II)-oxidizing (NDFO) bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. A second NDFO culture, culture BP, was obtained with a sample taken in 2015 at the same pond and cultured in a similar way. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture BP. Raw sequencing data of 16S rRNA amplicon sequencing (V4 region with Illumina and near full-length with PacBio), shotgun metagenomics, metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA693457. This dataset contains proteomics data for 2 conditions in triplicates. Samples R23, R24, and R25 are grown in autotrophic conditions, samples R26, R27, and R28 in heterotrophic conditions.

2021-05-17 | PXD023710 | Pride

16S rRNA amplicon sequencing

Project description:16S rRNA amplicon sequencing Raw sequence reads

| PRJNA434504 | ENA