Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Set4: ERCC bulk Loop-seq long-read RNA-seq by Illumina NovaSeq platform

ABSTRACT: Set4: ERCC bulk Loop-seq long-read RNA-seq by Illumina NovaSeq platform

PROVIDER: PRJNA1034966 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26638990.fastq.gz	Fastqsanger.gz
	SRR26638991.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Set4: ERCC bulk Loop-seq long-read RNA-seq by Illumina NovaSeq platform

Project description:DNA sequencing is a critical tool in modern biology. Over the last two decades, it has been revolutionized by the advent of massively parallel sequencing, leading to significant advances in genome and transcriptome sequencing of various organisms. Nevertheless, challenges such as accuracy, lack of competitive options and prohibitive costs associated with high throughput parallel short-read sequencing persist. Here, we conduct a comparative analysis between the Element Biosciences AVITI platform and its counterpart the Illumina NextSeq platform, testing DNA and RNA short-read sequencing, as well as synthetic long-read sequencing for single cells and RNA transcripts.

2024-08-19 | GSE246835 | GEO

Set2: ERCC bulk short-read RNA-seq by Illumina NextSeq platform

Project description:Set2: ERCC bulk short-read RNA-seq by Illumina NextSeq platform

| PRJNA1034964 | ENA

Set7: ERCC bulk short-read RNA-seq by Illumina NextSeq platform, additional samples

Project description:Set7: ERCC bulk short-read RNA-seq by Illumina NextSeq platform, additional samples

| PRJNA1123717 | ENA

Set2: ERCC bulk short-read RNA-seq by Illumina NextSeq platform

2024-08-19 | GSE246832 | GEO

Set3: ERCC bulk Loop-seq long-read RNA-seq by Element Biosciences AVITI platform

Project description:Set3: ERCC bulk Loop-seq long-read RNA-seq by Element Biosciences AVITI platform

| PRJNA1034963 | ENA

Gene expression analysis of yeast lacking Set4 under normal and stress conditions

Project description:Genome-wide gene expression data were generated for wildtype and set4 mutant yeast under aerobic and hypoxic conditions to determine the contribution of Set4 to gene expression. Illumina-based sequencing was performed on strand-specific libraries prepared from mRNA purified from yeast grown in rich medium aerobically or under hypoxia. Reads were processed for qualiy control, mapped to the genome, and differential gene expression was determined based on log fold-change differences between set4 mutants and wildtype.

2021-10-05 | GSE173901 | GEO

Set7: ERCC bulk short-read RNA-seq by Illumina NextSeq platform, additional samples

2024-08-19 | GSE269801 | GEO

Transcriptional profiling of Saccharomyces cerevisiae WT and set4∆ strains during hypoxia

Project description:Purpose: The goal of this study was to globally characterize the transcript levels of genes in Saccharomyces cerevisiae WT and set4∆ strains during hypoxia. Using transcriptome profiling of isogenic WT and set4∆ strains grown under aerobic or 8 hours of hypoxia. We analyzed the changes in gene expression that occur during aerobic and hypoxic conditions and identified sets of upregulated and downregulated gene expression.

2020-07-22 | GSE107492 | GEO

ERCC TAC-seq

Project description:ERCC TAC-seq

| PRJNA428505 | ENA

Set1: ERCC bulk short-read RNA-seq by Element Biosciences AVITI platform

Project description:Set1: ERCC bulk short-read RNA-seq by Element Biosciences AVITI platform

| PRJNA1034962 | ENA