Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Spatiotemporal single-cell RNA sequencing reveals that CD4+T subpopulation with high metabolic flux plays pivotal roles under in hyperthermia treatment warts

ABSTRACT: Spatiotemporal single-cell RNA sequencing reveals that CD4+T subpopulation with high metabolic flux plays pivotal roles under in hyperthermia treatment warts

PROVIDER: PRJNA1036114 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26678500_1.fastq.gz	Fastqsanger.gz
	SRR26678500_2.fastq.gz	Fastqsanger.gz
	SRR26678497_1.fastq.gz	Fastqsanger.gz
	SRR26678497_2.fastq.gz	Fastqsanger.gz
	SRR26678498_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Spatiotemporal single-cell RNA sequencing reveals that CD4+T subpopulation with high metabolic flux plays pivotal roles under in hyperthermia treatment warts

Project description:Cutaneous wart, regarded as a benign tumor, is a proliferative disease caused by human papillomavirus (HPV) infection. Local hyperthermia at 44°C can clear multiple HPV-infected skin lesions (warts) by targeting a single lesion, which suggested that the clearance of HPV was related to the activation of T cells immunity. To identify potential inflence on T cells for anti-HPV immunity after in response to hyperthermia treatment, single-cell RNA sequencing (scRNA-seq) was performed on CA tissue samples (A type of viral warts).

2024-11-30 | GSE247043 | GEO

Transcriptome analysis of HPV-induced warts and healthy skin in humans

Project description:The main purpose of this study is to investigate the differences between the gene expression profiles of common warts and healthy skin in HPV-positive individuals by RNA sequencing on the Illumina HiSeq 2500. After obtaining shave biopsies of common warts and healthy skin from twelve Arab males, we were able to analyze the transcriptomes of 24 paired cases and controls.

2019-08-27 | GSE136347 | GEO

Molecular determinants of tumor response to hyperthermia

Project description:A deeper mechanistic understanding of response to hyperthermia in cancer cells in comparison between hyperthermia sensitive and resistant ovarian cancer cell lines

2016-12-31 | GSE77310 | GEO

RNA-seq analysis of MmuPV1 infected mouse warts and control tissues

Project description:We perfomed RNA-seq analysis using MmuPV1 infected mouse warts and control tissues for MmuPV1 integration and host gene expression analyses

2021-07-14 | GSE163537 | GEO

Targeted DNA-seq analysis of MmuPV1 infected mouse warts and uninfected control tissues

Project description:We perfomed Targeted DNA-seq analysis using MmuPV1 infected mouse warts and uninfected control tissues for MmuPV1 integration analyses

2021-07-14 | GSE163681 | GEO

Identification of genes responsive to mild hyperthermia in human leukemia U937 cells

Project description:The rationale underlying hyperthermia is the fact that temperatures over 42.5˚C are highly cytotoxic to tumor cells. On the other hand, although mild hyperthermia at a range from 39 to 41˚C alone did not induce cytotoxicity in tumor cells, mild hyperthermia is reported to show a synergism with radiotherapy and anti-cancer drugs. Here, the effects of mild hyperthermia (41˚C for 30 min) on the gene expression in human lymphoma U937 cells were investigated using by an Affymetrix GeneChip system. Although the cells treated with the mild hyperthermia did not induce apoptosis, a significant increase in protein levels of heat shock proteins, Hsp40 and Hsp70, was observed following activation of heat shock factor-1. At 3 h post-treatment, 938 probe sets that were differentially expressed by >1.5-fold were identified. Keywords: mild hyperthermia, gene expression, Human lymphoma U937 cell

2008-01-03 | GSE10043 | GEO

Hyperthermia and p53 effects on global gene expressions

Project description:Neural tube defects (NTDs) are one of the most common human birth defects, with a prevalence of approximately 1 in 1000 live births in the United States. In animal studies, deletion of p53 and hyperthermia leads to a significant increase in embryos that exhibit exencephaly. To evaluate the effects of hyperthermia on p53-deficient mouse embryos we used microarray approach to find genes modified by deletion of p53 and hyperthermia treatment in day 8.5 mouse embryos to identify genes that may be involved in the mechanisms underlining NTDs and begin to define the developmental role of p53 in the etiology of NTDs.

2009-05-01 | GSE11547 | GEO

Effect of mild hyperthermia on Mk differentiation

Project description:Physical factors can have major influences on the proliferation and differentiation fate of hematopoietic stem cells in culture. Recently, we demonstrated that cord blood CD34+ cells undergo accelerated and increased megakaryocyte differentiation when incubated at 39°C. In this study, we investigated in detail the impacts of mild hyperthermia on the kinetics of megakaryocyte differentiation, maturation, polyploidization and cell viability. The qualitative and quantitative effects on Mk differentiation were found to be rapidly induced, and optimization of the culture length at 39°C led to greater Mk yields. Mild hyperthermia did not promote endomitosis of cord blood-derived Mk, but rather led to a small reduction in the proportion of polyploid Mk. Moreover, it had little impact on viability but induced a significant shift in the proportion of cells undergoing apoptosis at 37°C to necrosis at 39°C. Finally, our results suggest that the effects on megakaryocyte differentiation could be the consequences of aberrant expression of key megakaryocyte transcription factors induced by mild hyperthermia. Keywords: Effect of mild hyperthermia on Mk differentiation

2007-12-01 | GSE9218 | GEO

Identification of genes responsive to mild hyperthermia in human normal fibroblast OUMS-36 cells

Project description:Hyperthermia is widely used to treat patients with various cancers. Here, the effects of heat stress at 41°C for 30 min (mild hyperthermia) on the gene expression in OUMS-36 human normal fibroblast cells were investigated using an Affymetrix GeneChip system. The cells were treated with mild hyperthermia, followed by incubation for 0, 1, or 3 h at 37°C. No cell death was observed in the mild hyperthermia-treated cells. On the other hand, many genes that were differentially expressed by a factor 1.5 or greater were identified in the cells treated with the mild hyperthermia.

2012-07-13 | GSE39178 | GEO

Identification of genes responsive to mild hyperthermia in human skin normal fibroblast Hs68 cells

Project description:Hyperthermia is widely used to treat patients with various cancers. Here, the effects of heat stress at 41°C for 30 min (mild hyperthermia) on the gene expression in Hs68 human skin normal fibroblast cells were investigated using an Affymetrix GeneChip system. The cells were treated with mild hyperthermia, followed by incubation for 0, 1, or 3 h at 37°C. No cell death was observed in the mild hyperthermia-treated cells. On the other hand, many genes that were differentially expressed by a factor 1.5 or greater were identified in the cells treated with the mild hyperthermia.

2012-07-13 | GSE39177 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data