Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lilium sargentiae

ABSTRACT: The giant genome of lily provides insights into the hybridization of cultivated lilies

PROVIDER: PRJNA1037021 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31479300_1.fastq.gz	Fastqsanger.gz
	SRR31479300_2.fastq.gz	Fastqsanger.gz
	SRR31479301_1.fastq.gz	Fastqsanger.gz
	SRR31479301_2.fastq.gz	Fastqsanger.gz
	SRR31477302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 348

Similar Datasets

Whole transcriptome profiling of the vernalization process in Lilium longiflorum bulbs

Project description:We used high throughput sequencing of coding RNA to identify systematic patterns of expression during vernalization in meristems of lily bulbs that were treated with cold temperature for increasing periods of time. cDNA libraries were constructed from bulbs stored at 25 degrees Celsius (control) and at 4 degrees Celsius for 2, 5, 7 and 9 weeks

2015-03-17 | E-MTAB-2825 | biostudies-arrayexpress

Lilium hybrid division VII

Project description:Transcriptome sequencing of Asiatic hybrid lily cultivars

| PRJNA374640 | ENA

Lilium brownii

Project description:sRNA transcriptome data of lily bulbs treated with riboflavin Raw sequence reads

| PRJNA1063005 | ENA

Transcriptomic insight into viviparous growth in water lily

Project description:Here We revealed the complex mechanism of viviparity in water lily. The transcriptomic signatures identified in this pathway are important basis for future breeding and research of viviparity in water lily and other plant species.

2021-12-31 | GSE164888 | GEO

Lilium hybrid division I

Project description:RNA-seq-Based Genetic Evaluation of Bicolor Tepal Pigmentation in Asiatic Hybrid Lilies (Lilium spp)

| PRJDB4732 | ENA

Establishment of Giant Panda Induced Pluripotent Stem Cells

Project description:The giant panda (Ailuropoda melanoleuca) stands as a flagship and umbrella species, symbolizing global biodiversity. While traditional assisted reproductive technology faces constraints in safeguarding the genetic diversity of giant pandas and bolstering the population size of giant pandas, induced pluripotent stem cells (iPSCs) known for their capacity to differentiate into diverse cells types, including germ cells, present a transformative potential for conservation of endangered animals. In our study, we isolated primary fibroblast cells from an individual giant panda and successfully generated giant panda induced pluripotent stem cells (GPiPSCs) through a non-integrating episomal vectors reprogramming method. Characterization of these GPiPSCs revealed their state of primed pluripotency and demonstrated their potential for differentiation. Furthermore, we innovatively formulated a species-specific chemically defined FACL medium and unraveled the intricate signaling pathway networks responsible for maintaining the pluripotency and fostering cell proliferation of GPiPSCs. This study provides key insights into rare species iPSCs, offering materials for panda characteristics research and laying the groundwork for in vitro giant panda gamete generation, potentially aiding endangered species conservation.

2024-09-25 | GSE250292 | GEO

Integrated epigenomic analysis identifies structural alterations associated with oncogenic gene expression in liposarcoma

Project description:Liposarcoma (LPS) is the most common soft-tissue sarcoma in adults. The two most frequent subtypes well differentiated (WD) and dedifferentiated (DD) LPS are often marked with the giant chromosome and the amplifications of chromosome 12q13-15. However, it remains unknown how this genomic aberrancy contributes to the dysregulation of the oncogenes. Here, we reported a comprehensive molecular characterization of both tumor and normal tissues from the same batch of LPS patients, including Hi-C, H3K27ac ChIP-seq, RNA-seq and WGS datasets. We identified a library of tumor-specific enhancers that may play a critical role in oncogenesis. We also demonstrated the enhancer co-amplification and hijacking events involved with proto-oncogenes such as MDM2, CDK4 and HMGA2, which have not been previously reported and as a novel mechanism to upregulate these genes. By combining Hi-C, optical mapping, Nanopore long reads and WGS data, we partially resolved complex structure variations (SVs) and reconstructed the local genome and the giant chromosome. We further validated the presence of multiple copies of MDM2 and CDK4 are located on the giant chromosome by fluorescent in situ hybridization (FISH). Consequently, this study provides a comprehensive resource for further research in LPS.

2023-03-03 | GSE201056 | GEO

Gene expression of P. putida KT2440 cultivated in an anoxic bioelectrochemical system

Project description:To get insights in the electrogenic anaerobic lifestyle of P. putida KT2440 cultivated in a bioelectrochemical system (BES), we employed whole genome microarray expression profile.

2024-09-18 | GSE266590 | GEO

Lilium cultivar:Oriental hybrid lily cultivar ‘Sorbonne’

Project description:Lilium cultivar:Oriental hybrid lily cultivar ‘Sorbonne’ Raw sequence reads

| PRJNA435633 | ENA

Project description:Genome sequencing of water lilies

| PRJNA360175 | ENA